Diff for "AnalyzingData/MNE_AllInOne" - Meg Wiki
location: Diff for "AnalyzingData/MNE_AllInOne"
Differences between revisions 1 and 3 (spanning 2 versions)
⇤ ← Revision 1 as of 2010-07-16 13:36:09 →
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Editor: YaaraErez
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← Revision 3 as of 2010-07-16 13:45:42 → ⇥
Size: 1345
Editor: YaaraErez
Comment:
Deletions are marked like this. Additions are marked like this.
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mne_watershed_bem '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:'''

mne_watershed_bem

'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:'''
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'''Prepare Source Space (Cortical Surface) for MNE:'''
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Align coordinate systems
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mne_setup_forward_model '''Align MEG and MRI coordinate systems'''

mne_analyze


'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:'''

mne_setup_forward_model


'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:'''
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Average MEG Data, Compute Covariance Matrix:
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:'''
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Compute Average Cortical Surface:
'''Compute Average Cortical Surface:'''
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Create Inverse Operator:
'''Create Inverse Operator (from Forward Solution):'''
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Compute Source Estimates:
'''Compute Source Estimates (Apply Inverse Operator to MEG data):'''
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Average Source Estimates:
'''Average Source Estimates:'''
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Extract ROI data:
'''Extract ROI data:'''
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Visualisation:
'''Visualisation:'''

Overview of MNE Processing Steps and Commands

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:

mne_watershed_bem

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:

mne_setup_mri

Prepare Source Space (Cortical Surface) for MNE:

mne_setup_source_space

Align MEG and MRI coordinate systems

mne_analyze

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:

mne_setup_forward_model

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:

mne_do_forward_solution

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:

mne_process_raw

Compute Average Cortical Surface:

make_average_subject

Create Inverse Operator (from Forward Solution):

mne_do_inverse_operator

Compute Source Estimates (Apply Inverse Operator to MEG data):

mne_make_movie

Average Source Estimates:

mne_average_estimates

Extract ROI data:

mne_make_movie

Visualisation:

mne_analyze

CbuMeg: AnalyzingData/MNE_AllInOne (last edited 2013-03-08 10:02:29 by localhost)