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| = Welcome = ||~+Neuroimaging studies are carried out on the CBU site using a Siemens 3T Tim Trio Magnetic Resonance Imaging (or MRI) [[CbuMriFacility:|scanner]] that is wholly dedicated to studies in Cognitive Neuroscience. The CBU now constitutes one of the largest concentrations of cognitive scientists and neuroscientists on a single site anywhere in the world, with nearly 100 active scientists, students and research staff. <<BR>><<BR>> A priority in the CBU research strategy over the last 5 years has been to develop a strong research programme in neuroimaging, working closely with the Wolfson Brain Imaging Centre, and more than half of the scientific staff and students are actively involved in neuroimaging projects. From emotions and memories to language and learning, functional neuroimaging is being applied in many different areas of Cognitive Neuroscience. <<BR>><<BR>> In many cases, this research relies upon support from healthy volunteers, although neuroimaging studies are also being conducted in various clinical populations, including depression, anxiety, Parkinson's disease and Alzheimer's disease. +~ || {{attachment:brainsmall.jpg}} || |
= Welcome to the CBU Imaging Wiki = '''The CBU Imaging Wiki hosts a wealth of information on the design and analysis fMRI studies.''' |
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| Some of the links below also lead to our [[http://imaging.mrc-cbu.cam.ac.uk/methods/|Methods Wiki]] and [[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]]. | |
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| This wiki covers (f)MRI, [[CbuMeg:CbuMeg|MEG]] and [[CbuEeg:CbuEeg|EEG]] have their own wikis. = Shortcuts = |
If you have feedback or want to contribute to our Wiki pages, please contact OlafHauk or [[https://www.mrc-cbu.cam.ac.uk/people/dace.apsvalka/|Dace Apšvalka]]. <<BR>> <<BR>> |
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| ||<style="TEXT-ALIGN:center">'''[[UsingVNC|VNC]]''' <<BR>><<BR>> '''[[AvailableSoftware|Software]]''' <<BR>><<BR>> '''[[CbuMethods:unixsurvivalguide|Unix Survival Guide]]''' ||<style="TEXT-ALIGN:center">'''[[http://intranet.mrc-cbu.cam.ac.uk/computing/|CBU Computing Intranet]]''' <<BR>><<BR>> '''[[CbuMeg:Beginners/MatlabIntroCBU/RussellComputing.pdf|Overview CBU Computing]]''' ||<style="TEXT-ALIGN:center">'''CbuMeg:Beginners'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/MatlabLecturesSchedule|Matlab Intro]]''' <<BR>><<BR>> '''[[CbuMethods:education|Courses/Lectures]]''' ||<style="TEXT-ALIGN:center">'''[[LoadShare|Load Share]]''' ||<style="TEXT-ALIGN:center">'''[[ImagersInterestGroup|IIG]]''' <<BR>><<BR>>''' [[IigSchedule|IIG Schedule]] '''<<BR>><<BR>>'''[[http://intranet.mrc-cbu.cam.ac.uk/administration/unit-committees/imc/|IMC]]''' <<BR>><<BR>> '''[[http://intranet.mrc-cbu.cam.ac.uk/imaging/mriadmin/|Internal Admin]]''' ||<style="TEXT-ALIGN:center">'''[[CbuMethods:stimdatabases|Tools for stimulus generation]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/EyeTracking|Eye Tracking]]''' || ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/CBUInterestGroups|Interest Groups]]''' ||<style="TEXT-ALIGN:center">'''[[CbuMethods:NavigateOurWiki|Navigate our Wikis]]''' ||'''[[AvailableScripts|Scripts]]'''|| |
||<style="text-align:center;">'''Computing''' ||<style="text-align:center;">'''Methods Training''' ||<style="text-align:center;">'''Imaging Admin''' ||<style="text-align:center;">'''Behavioural Methods''' ||<style="text-align:center;">'''Resources''' ||<style="text-align:center;">'''Events''' || || ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AvailableSoftware|Overview CBU Computing]]'''<<BR>><<BR>>'''[[https://intranet.mrc-cbu.cam.ac.uk/intranet_category/computing/|CBU Computing Intranet]]'''<<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AvailableSoftware|Software Support]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/unixsurvivalguide|Unix Survival Guide]]'''<<BR>><<BR>> '''[[http://forum.mrc-cbu.cam.ac.uk/qa/|Community Support Forum]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/methods/education|Skills-Oriented Training Around Cambridge]]'''''' <<BR>><<BR>>''' '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/MatlabLecturesSchedule|Introduction to Scientific Computing at the CBU]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/IntroductionNeuroimagingLectures|Introduction to Neuroimaging]]''' <<BR>><<BR>> '''[[https://imaging.mrc-cbu.cam.ac.uk/meg/Beginners|If you are new...]]''' ||<style="TEXT-ALIGN:center">'''[[https://imaging.mrc-cbu.cam.ac.uk/methods/MondayMethodsMeetings|Monday Methods Meetings (MMMs)]]''' <<BR>><<BR>>'''[[http://intranet.mrc-cbu.cam.ac.uk/home/project-presentation-meeting/#intranet-sp-2-1|Project Presentation Meetings (PPMs)]]''' <<BR>><<BR>>''' ''''''[[https://imaging.mrc-cbu.cam.ac.uk/imaging/ImagingManagementCommittee|Imagers Management Committee]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/EyeTracking|Eye Tracking]]''' ||<style="TEXT-ALIGN:center">'''[[https://imaging.mrc-cbu.cam.ac.uk/imaging/bids|BIDS tutorials]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/stimdatabases|Databases, Stimulus generation]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/OpenDatasets|Open Datasets]]''' <<BR>><<BR>> '''[[https://imaging.mrc-cbu.cam.ac.uk/methods/OpenDatasetsCBU|Open Datasets at CBU]]''' <<BR>><<BR>> '''[[https://imaging.mrc-cbu.cam.ac.uk/methods/NavigateOurWiki|Navigate our Wikis]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]]''' ||<style="TEXT-ALIGN:center">'''[[http://www.talks.cam.ac.uk/show/index/79078|Imagers Interest Group talks]]'''<<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/methods/MethodsDaySchedule|Cambridge Methods Day]]'''<<BR>><<BR>>'''[[https://www.mrc-cbu.cam.ac.uk/events/cognestic-2024/|COGNESTIC]] '''<<BR>><<BR>>'''[[https://imaging.mrc-cbu.cam.ac.uk/methods/SEM_Workshop_March2023|SEM Workshop]] ''' ||<style="TEXT-ALIGN:center"> || |
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| ||||||||||||||<#e8e8e8 style="TEXT-ALIGN:center">'''~+fMRI Imaging+~''' || | ||||||||||||||<#e8e8e8 style="TEXT-ALIGN:center">'''~+(f)MRI+~''' || |
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| ||<style="TEXT-ALIGN:center">'''[[AnalysisPrinciples|Analysis Principles]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/|fMRI Handbook]]''' <<BR>><<BR>> '''[[SpmMiniCourse2008|SPM Mini Course]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc|SPM docus]]''' ||<style="TEXT-ALIGN:center">'''[[FreesurferGoodies|FreeSurfer]]''' ||<style="TEXT-ALIGN:center">'''[[ImagingSequences|Sequences]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery|Stimulus Delivery]]''' <<BR>><<BR>> '''[[CbuMethods:psychophysiology|Psychophysiology]]''' ||<style="TEXT-ALIGN:center">'''[[DataDiagnostics|Diagnostics]]''' ||<style="TEXT-ALIGN:center">'''[[PrinciplesStatistics|Stats Principles]]''' <<BR>><<BR>> '''[[PrinciplesRandomEffects|RFX]]''' <<BR>><<BR>> '''[[DesignEfficiency|Design Efficiency]]''' || ||<style="TEXT-ALIGN:center">'''[[BrodmannAreas|Brodmann Areas]]''' <<BR>><<BR>> '''[[NeuroanatomyTutorial|Neuroanatomy Tutorial]]''' ||<style="TEXT-ALIGN:center">'''MarsBar''' ||<style="TEXT-ALIGN:center">'''[[MeetingsListsContacts|Meetings etc.]]''' ||<style="TEXT-ALIGN:center">'''[[MultiVoxelPatternAnalysis|MVPA]]''' ||<style="TEXT-ALIGN:center">'''[[AnalyzingDiffusion|DTI]]''' ||<style="TEXT-ALIGN:center">'''[[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html|SPM scripts]]''' || ||<style="TEXT-ALIGN:center">'''[[MDsystem|The Multiple Demand System]]''' ||<style="TEXT-ALIGN:center">[[attachment:djm_gradseminar_2013.ppt|Introduction to fMRI - graduate seminar slides]] ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center">'''[[AA|AA (ver. 4)]]''' || |
||<style="text-align:center;">'''Software''' ||<style="text-align:center;">'''Basics''' ||<style="text-align:center;">'''Data Acquisition''' ||<style="text-align:center;">'''Special Topics''' ||<style="text-align:center;">'''Resources''' || ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AA|AA (V4)]]'''<<BR>><<BR>> '''[[https://imaging.mrc-cbu.cam.ac.uk/imaging/FreesurferGoodies|FreeSurfer]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MarsBar|MarsBar]]'''<<BR>><<BR>> '''[[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html|Henson's Scripts]]''' ||<style="TEXT-ALIGN:center">'''[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/|fMRI Handbook]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AnalysisPrinciples|Analysis Principles]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse|SPM Mini Course]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc|SPM docus]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/ImagingSequences|MRI Sequences]]''' <<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery|Stimulus Delivery]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/psychophysiology|Psychophysiology]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AnalyzingDiffusion|DTI]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MDsystem|The Multiple Demand System]]'''<<BR>><<BR>>'''[[https://imaging.mrc-cbu.cam.ac.uk/imaging/MultiVoxelPatternAnalysis|MVPA]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/PrinciplesStatistics|Stats Principles]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/PrinciplesRandomEffects|RFX]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/DesignEfficiency|Design Efficiency]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/DataDiagnostics|Diagnostics]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/NeuroanatomyTutorial|Neuroanatomy Tutorial]]'''<<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/BrodmannAreas|Brodmann Areas]]'''<<BR>><<BR>> || |
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===== Disclaimer: ===== ~-The information contained in this website is for general information purposes only. MRC is not responsible for any errors or omissions, or for the results obtained from the use of information on this website. All information in this website is provided "as is", with no guarantee of completeness, accuracy, or timeliness, and without warranty of any kind, express or implied, including, but not limited to warranties of performance, merchantability and fitness for a particular purpose. In no event will MRC be liable to you or anyone else for any decision made or action taken in reliance on the information in this website or for any consequential, special or similar damages, even if advised of the possibility of such damages. Certain links in this website connect to other websites maintained by third parties. We have no control over the nature, content and availability of those sites. The inclusion of any links does not necessarily imply a recommendation or endorse the views expressed within them. MRC makes no representations as to the accuracy or any other aspect of information contained in other websites. -~ |
Welcome to the CBU Imaging Wiki
The CBU Imaging Wiki hosts a wealth of information on the design and analysis fMRI studies.
Some of the links below also lead to our Methods Wiki and Statistics Wiki.
If you have feedback or want to contribute to our Wiki pages, please contact OlafHauk or Dace Apšvalka.
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Basics |
Data Acquisition |
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Hint: if you're using the search button on the left, be sure to press the "Text" button if you want to search the content of pages rather than just their titles.
Disclaimer:
The information contained in this website is for general information purposes only. MRC is not responsible for any errors or omissions, or for the results obtained from the use of information on this website. All information in this website is provided "as is", with no guarantee of completeness, accuracy, or timeliness, and without warranty of any kind, express or implied, including, but not limited to warranties of performance, merchantability and fitness for a particular purpose. In no event will MRC be liable to you or anyone else for any decision made or action taken in reliance on the information in this website or for any consequential, special or similar damages, even if advised of the possibility of such damages. Certain links in this website connect to other websites maintained by third parties. We have no control over the nature, content and availability of those sites. The inclusion of any links does not necessarily imply a recommendation or endorse the views expressed within them. MRC makes no representations as to the accuracy or any other aspect of information contained in other websites.