Diff for "MEGSynch" - CBU MRI facility Wiki
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Editor: TiborAuer
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← Revision 6 as of 2016-02-23 15:16:36 → ⇥
Size: 4254
Editor: TiborAuer
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= ScannerSynch =
ScannerSynch provides an interface for National Instruments PCI 6503 card used to capture all pulses (scanner synch pulse and button pulses alike).		 = MEGSynch =
MEGSynch provides an interface for National Instruments PCI 6503 card used to capture all pulses (scanner synch pulse and button pulses alike) when using MATLAB.
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help ScannerSynchClass help MEGSynchClass
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== Obtain ScannerSynch == == Obtain MEGSynch ==
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 * ScannerSynch is available on all relevant PCs (StimPCs, "mimic" PC)  * MEGSynch is available on MEG PC
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 * You can also download it from [[attachment:ScannerSynchClass.m|here]] (right-click and "Save As...")  * You can also download it from [[attachment:MEGSynchClass.m|here]] (right-click and "Save As...")
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== Using ScannerSynch == == Using MEGSynch ==
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 * Default. Use only if device (scanner, pulse emulator) is connected (only in StimPCs and mimic PC)!  * Default. Use only in MEG lab!
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SSO = ScannerSynchClass; MEG = MEGSynchClass;
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 * Emulations:  . Default button mapping:
 . || 'LY' |||| 'S3' ||
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SSO = ScannerSynchClass(1); % emulate scanner synch pulse MEG = MEGSynchClass({'B1','S4';'B2','S5'}); % specify button names "B1" and "B2" and maps them to S4 and S5
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 * Emulation:
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SSO = ScannerSynchClass(0,1); % emulate button box
}}}
 . {{{#!highlight matlab numbers=off
SSO = ScannerSynchClass(1,1); % emulate scanner synch pulse and button box		 MEG = MEGSynchClass(1); % full emulation
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!ScannerSynchClass has a destructor, which is automatically triggered if the object is deleted (e.g. clear, returning function). If you use a script, however, it does not perform any auto-clear, so you have to destroy the object manually: !MEGSynchClass has a destructor, which is automatically triggered if the object is deleted (e.g. clear, returning function). If you use a script, however, it does not perform any auto-clear, so you have to destroy the object manually:
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SSO.delete; MEG.delete;

MEGSynch

MEGSynch provides an interface for National Instruments PCI 6503 card used to capture all pulses (scanner synch pulse and button pulses alike) when using MATLAB.

For more information, type in MATLAB 

help MEGSynchClass

N.B.: National Instruments PCI 6503 card does not monitor pulses in the background, so you have to make sure that you wait for any pulse before it comes!

Any problems, report them to Tibor Auer.

Contents

  1. MEGSynch
    1. Obtain MEGSynch
    2. Using MEGSynch
      1. Initialise
      2. Close
      3. Capture scanner synch pulse
      4. Capture button presses

Obtain MEGSynch

  • MEGSynch is available on MEG PC

  • From your desktop PC (Windows), you can also have a copy from \\cbsu\data\Group\Imaging-Local\cbu\matlab

  • You can also download it from here (right-click and "Save As...")

Using MEGSynch

Initialise

  • Default. Use only in MEG lab! 
  • MEG = MEGSynchClass;
  • Default button mapping:
  • ||

    'LY' |||| 'S3' || 

  • MEG = MEGSynchClass({'B1','S4';'B2','S5'}); % specify button names "B1" and "B2" and maps them to S4 and S5
  • Emulation: 
  • MEG = MEGSynchClass(1);   % full emulation

Close

!MEGSynchClass has a destructor, which is automatically triggered if the object is deleted (e.g. clear, returning function). If you use a script, however, it does not perform any auto-clear, so you have to destroy the object manually: 

  • MEG.delete;

Capture scanner synch pulse

  • Simple case 
  • SSO.SetSynchReadoutTime(0.5); % make sure that you do not detect the same pule twice
SSO.TR = 2;                   % allows detecting missing pulses
while SSO.SynchCount < 10     % polls 10 pulses
    SSO.WaitForSynch;
    fprintf('Pulse %d: %2.3f. Measured TR = %2.3fs\n',...
        SSO.SynchCount,...
        SSO.TimeOfLastPulse,...
        SSO.MeasuredTR);
end
  • Chance for missing pulse 
  • SSO.SetSynchReadoutTime(0.5);  % make sure that you do not detect the same pule twice
SSO.TR = 2;                    % allows detecting missing pulses
while SSO.SynchCount < 10      % until 10 pulses
    WaitSecs(Randi(100)/1000); % in every 0-100 ms ...
    if SSO.CheckSynch(0.01)    % ... waits for 10 ms for a pulse
        fprintf('Pulse %d: %2.3f. Measured TR = %2.3fs. %d synch pulses has/have been missed\n',...
            SSO.SynchCount,...
            SSO.TimeOfLastPulse,...
            SSO.MeasuredTR,...
            SSO.MissedSynch);
    end
end

Capture button presses

  • SSO.SetButtonReadoutTime(0.5);      % block individual buttons for 0.5s after button press so we will not detect the same button press twice
% SSO.SetButtonBoxReadoutTime(0.5); % block the whole buttonbox for 0.5s after button press 
% SSO.Keys = {'f1','f2','f3','f4'}; % emulation Buttons #1-#4 with F1-F4
n = 0;
% SSO.BBoxTimeout = 1.5;            % Wait for button press for 1.5s
% SSO.BBoxTimeout = -1.5;           % Wait for button press for 1.5s even in case of response
SSO.ResetClock;
while n ~= 10                       % polls 10 button presses
    SSO.WaitForButtonPress;         % Wait for any button to be pressed
    % SSO.WaitForButtonRelease;       % Wait for any button to be released
    % SSO.WaitForButtonPress([],2); % Wait for Button #2
    % SSO.WaitForButtonPress(2);    % Wait for any button for 2s (overrides SSO.BBoxTimeout only for this event)
    % SSO.WaitForButtonPress(-2);   % Wait for any button for 2s even in case of response (overrides SSO.BBoxTimeout only for this event)
    % SSO.WaitForButtonPress(2,2);  % Wait for Button #2 for 2s (overrides SSO.BBoxTimeout only for this event)
    % SSO.WaitForButtonPress(-2,2); % Wait for Button #2 for 2s even in case of response (overrides SSO.BBoxTimeout only for this event)
    n = n + 1;
    fprintf('At %2.3fs, ',SSO.Clock);
    fprintf('Button %d ',SSO.LastButtonPress);
    fprintf('pressed: %2.3fs\n',SSO.TimeOfLastButtonPress);
end