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Describe SecondLevel here. __'''Second Level Analysis: Multiple Comparisons, SVC, ROI analysis'''__[[BR]]

You can download a copy of Nadja and Ben's talks here: attachment:SecondLevel.ppt attachment:ROIAnalysis.pptx [[BR]]


__'''Web Resources'''__[[BR]]

Below is a list of web resources used in the talk [[BR]][[BR]]
[http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf PickAtlas][[BR]]
[http://www.fil.ion.ucl.ac.uk/spm/ UCL's Pages][[BR]][[BR]]

'''Multiple Subjects'''[[BR]][[BR]]
[http://mindhive.mit.edu/node/92 RFX and FFX on The MIT Wiki][[BR]]
[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf Penny and Holmes(2003)][[BR]][[BR]]
'''ROI Analysis'''[[BR]][[BR]]

[http://mindhive.mit.edu/node/101 ROI FAQ on The MIT Wiki][[BR]]
[http://marsbar.sourceforge.net/index.html MarsBaR][[BR]]
[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach tal2mni & mni2tal scripts][[BR]]


__'''References'''__[[BR]][[BR]]
'''Random Field Theory'''[[BR]][[BR]]
attachment:Brett2003.pdf Brett et al., (2003) An Introduction to Random Field Theory[[BR]]
attachment:Worsley2003.pdf Worsley et al., (2003) Developments in Random Field Theory

'''ROI Analysis'''[[BR]]

Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. ''Neuroimage'', 30(4), 1077-87. [[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/16635579 PMID: 16635579][[BR]]
Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. ''Neuroimage'', 30(4), 1088-96; discussion 1097-9.[[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/16635578 PMID: 16635578][[BR]]
Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.[[BR]]
 attachment:IndependenceROI.pdf [[BR]]
Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher[[BR]]
 attachment:VulKanwisher.pdf [[BR]]
Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. ''Neuroimage'', 19(4), 1303-1316. [[BR]]
 [http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065 DOI: 10.1016/S1053-8119(03)00188-5][[BR]]
Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. ''SCAN'', (2) 67-70[[BR]]
 attachment:PoldrackROIAnalysis.pdf[[BR]]
Kawabata, Devlin (2011) Improving the reliability of functional localizers. ''Neuroimage'' [[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/21600292 PMID: 21600292]

Second Level Analysis: Multiple Comparisons, SVC, ROI analysisBR

You can download a copy of Nadja and Ben's talks here: attachment:SecondLevel.ppt attachment:ROIAnalysis.pptx BR

Web ResourcesBR

Below is a list of web resources used in the talk BRBR [http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf PickAtlas]BR [http://www.fil.ion.ucl.ac.uk/spm/ UCL's Pages]BRBR

Multiple SubjectsBRBR [http://mindhive.mit.edu/node/92 RFX and FFX on The MIT Wiki]BR [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf Penny and Holmes(2003)]BRBR ROI AnalysisBRBR

[http://mindhive.mit.edu/node/101 ROI FAQ on The MIT Wiki]BR [http://marsbar.sourceforge.net/index.html MarsBaR]BR [http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach tal2mni & mni2tal scripts]BR

ReferencesBRBR Random Field TheoryBRBR attachment:Brett2003.pdf Brett et al., (2003) An Introduction to Random Field TheoryBR attachment:Worsley2003.pdf Worsley et al., (2003) Developments in Random Field Theory

ROI AnalysisBR

Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. Neuroimage, 30(4), 1077-87. BR

Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. Neuroimage, 30(4), 1088-96; discussion 1097-9.BR

Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.BR

  • attachment:IndependenceROI.pdf BR

Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy KanwisherBR

Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. Neuroimage, 19(4), 1303-1316. BR

Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. SCAN, (2) 67-70BR

  • attachment:PoldrackROIAnalysis.pdfBR

Kawabata, Devlin (2011) Improving the reliability of functional localizers. Neuroimage BR

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