Diff for "SecondLevel" - MRC CBU Imaging Wiki
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__'''Second Level Analysis: Multiple Comparisons, SVC, ROI analysis'''__[[BR]] __'''Second Level Analysis: Multiple Comparisons, SVC, ROI analysis'''__<<BR>>
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You can download a copy of Nadja and Ben's talks here: attachment:SecondLevel.ppt attachment:ROIAnalysis.pptx [[BR]] You can download a copy of Nadja and Ben's talks here: [[attachment:SecondLevel.ppt]] [[attachment:ROIAnalysis.pptx]] <<BR>>
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__'''Web Resources'''__[[BR]] __'''Web Resources'''__<<BR>>
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Below is a list of web resources used in the talk [[BR]][[BR]]
[http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf  PickAtlas][[BR]]
[http://www.fil.ion.ucl.ac.uk/spm/ UCL's Pages][[BR]][[BR]]		 Below is a list of web resources used in the talk <<BR>><<BR>>
[[http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf|PickAtlas]]<<BR>>
[[http://www.fil.ion.ucl.ac.uk/spm/|UCL's Pages]]<<BR>><<BR>>
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'''Multiple Subjects'''[[BR]][[BR]]
[http://mindhive.mit.edu/node/92 RFX and FFX on The MIT Wiki][[BR]]
[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf Penny and Holmes(2003)][[BR]][[BR]]
'''ROI Analysis'''[[BR]][[BR]]		 '''Multiple Subjects'''<<BR>><<BR>>
[[http://mindhive.mit.edu/node/92|RFX and FFX on The MIT Wiki]]<<BR>>
[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf|Penny and Holmes(2003)]]<<BR>><<BR>>
'''ROI Analysis'''<<BR>><<BR>>
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[http://mindhive.mit.edu/node/101 ROI FAQ on The MIT Wiki][[BR]]
[http://marsbar.sourceforge.net/index.html MarsBaR][[BR]]
[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach tal2mni & mni2tal scripts][[BR]]		 [[http://mindhive.mit.edu/node/101|ROI FAQ on The MIT Wiki]]<<BR>>
[[http://marsbar.sourceforge.net/index.html|MarsBaR]]<<BR>>
[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach|tal2mni & mni2tal scripts]]<<BR>>
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__'''References'''__[[BR]][[BR]]
'''Random Field Theory'''[[BR]][[BR]]
attachment:Brett2003.pdf Brett et al., (2003) An Introduction to Random Field Theory[[BR]]
attachment:Worsley2003.pdf Worsley et al., (2003) Developments in Random Field Theory		 __'''References'''__<<BR>><<BR>>
'''Random Field Theory'''<<BR>><<BR>>
[[attachment:Brett2003.pdf]] Brett et al., (2003) An Introduction to Random Field Theory<<BR>>
[[attachment:Worsley2003.pdf]] Worsley et al., (2003) Developments in Random Field Theory
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'''ROI Analysis'''[[BR]] '''ROI Analysis'''<<BR>>
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Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. ''Neuroimage'', 30(4), 1077-87. [[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/16635579 PMID: 16635579][[BR]]
Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. ''Neuroimage'', 30(4), 1088-96; discussion 1097-9.[[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/16635578 PMID: 16635578][[BR]]
Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.[[BR]]
 attachment:IndependenceROI.pdf [[BR]]
Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher[[BR]]
 attachment:VulKanwisher.pdf [[BR]]
Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. ''Neuroimage'', 19(4), 1303-1316. [[BR]]
 [http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065 DOI: 10.1016/S1053-8119(03)00188-5][[BR]]
Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. ''SCAN'', (2) 67-70[[BR]]
 attachment:PoldrackROIAnalysis.pdf [[BR]]
Kawabata, Devlin (2011) Improving the reliability of functional localizers. ''Neuroimage'' [[BR]]
 [http://www.ncbi.nlm.nih.gov/pubmed/21600292 PMID: 21600292]		 Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. ''Neuroimage'', 30(4), 1077-87. <<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/16635579|PMID: 16635579]]<<BR>>
Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. ''Neuroimage'', 30(4), 1088-96; discussion 1097-9.<<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/16635578|PMID: 16635578]]<<BR>>
Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.<<BR>>
 [[attachment:IndependenceROI.pdf]] <<BR>>
Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher<<BR>>
 [[attachment:VulKanwisher.pdf]] <<BR>>
Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. ''Neuroimage'', 19(4), 1303-1316. <<BR>>
 [[http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065|DOI: 10.1016/S1053-8119(03)00188-5]]<<BR>>
Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. ''SCAN'', (2) 67-70<<BR>>
 [[attachment:PoldrackROIAnalysis.pdf]] <<BR>>
Kawabata, Devlin (2011) Improving the reliability of functional localizers. ''Neuroimage'' <<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/21600292|PMID: 21600292]]

Second Level Analysis: Multiple Comparisons, SVC, ROI analysis

You can download a copy of Nadja and Ben's talks here: SecondLevel.ppt ROIAnalysis.pptx

Web Resources

Below is a list of web resources used in the talk

PickAtlas
UCL's Pages

Multiple Subjects

RFX and FFX on The MIT Wiki
Penny and Holmes(2003)

ROI Analysis

ROI FAQ on The MIT Wiki
MarsBaR
tal2mni & mni2tal scripts

References

Random Field Theory

Brett2003.pdf Brett et al., (2003) An Introduction to Random Field Theory
Worsley2003.pdf Worsley et al., (2003) Developments in Random Field Theory

ROI Analysis

Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. Neuroimage, 30(4), 1077-87.

Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. Neuroimage, 30(4), 1088-96; discussion 1097-9.

Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.

Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher

Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. Neuroimage, 19(4), 1303-1316.

Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. SCAN, (2) 67-70

Kawabata, Devlin (2011) Improving the reliability of functional localizers. Neuroimage

CbuImaging: SecondLevel (last edited 2013-03-07 21:23:08 by localhost)