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| __'''Study Design and Efficiency'''__[[BR]] | __'''Study Design and Efficiency'''__<<BR>> |
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| You can download a copy of Lisa and Apoorva's talks here: attachment:Design.ppt attachment:Efficiency.ppt [[BR]] | You can download a copy of Lisa and Apoorva's talks here: [[attachment:Design.ppt]] [[attachment:Efficiency.ppt]] <<BR>> |
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| __'''Web Resources'''__[[BR]] | __'''Web Resources'''__<<BR>> |
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| Below is a list of web resources used in the talk [[BR]] | Below is a list of web resources used in the talk <<BR>> |
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| [http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/Henson_SPM_06_preprint.pdf/ Rik Henson's article (printable version). Also on the imaging wiki. ][[BR]] | [[attachment:HensonSPM06.pdf|Henson SPM 06]]<<BR>> Rik Henson's article. Also on the imaging wiki. |
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| [http://www.fil.ion.ucl.ac.uk/spm/doc/papers/karl_stochastic.pdf/ This is one of the old Friston papers looking at stochastic designs in event related designs. It has a clear explanation of efficiency that is worth a read.][[BR]] | [[attachment:Stochastic.pdf|Stochastic Designs]]<<BR>> This is one of the old Friston papers looking at stochastic designs in event related designs. It has a clear explanation of efficiency that is worth a read. |
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| [http://dx.doi.org/10.1016/j.neuroimage.2003.09.031/ Thomas Liu's article on the fundamental trade-offs between estimation and detection. Must read.][[BR]] | [[attachment:TradeOff.pdf|Liu Trade-off Paper]]<<BR>> Thomas Liu's article on the fundamental trade-offs between estimation and detection. Must read. |
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| [:http://www.fil.ion.ucl.ac.uk/spm/doc/papers/WagerNichols.pdf/ Tor Wager's article on Genetic Algoirthms. The background on efficiency issues is worth a read even if you are not interested in Genetic Algorithms.] [[BR]] | [[attachment:GeneticAlgorithms.pdf|Tor Wager's article on Genetic Algoirthms]]<<BR>> |
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| The background on efficiency issues is worth a read even if you are not interested in Genetic Algorithms. | |
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| See also DesignEfficiency pages on the imaging wiki. | |
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| __'''References'''__[[BR]] | __'''Tools'''__<<BR>> |
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| ''Spatial Normalisation'' [[BR]] Functional Magnetic Resonance Imaging. (2004). Huettel, S.A., Song, A.W., & Mc Carthy, G. p269-279. [[BR]] Statistical Parametric Mapping: The Analysis of Functional Brain Images. K.J. Friston, J. Ashburner, S.J. Kiebel, T.E. Nichols, and W.D. Penny, editors.p13-14, 63-78 |
[[http://surfer.nmr.mgh.harvard.edu/optseq/|Optseq2]] <<BR>> To optimize sequences [[http://www.fil.ion.ucl.ac.uk/spm/ext/#GA/|Genetic Algorithms]] <<BR>> Genetic Algorithm SPM toolbox (Tor Wager) [[http://www.fil.ion.ucl.ac.uk/spm/ext/#Design_Magic|SPM colinearity toolbox]] <<BR>> SPM toolbox for assessing collinearity (Matthijs Vink) See CodeShare for a short script that allows you to check your own design efficiency. |
Study Design and Efficiency
You can download a copy of Lisa and Apoorva's talks here: Design.ppt Efficiency.ppt
Web Resources
Below is a list of web resources used in the talk
- Rik Henson's article. Also on the imaging wiki.
- This is one of the old Friston papers looking at stochastic designs in event related designs. It has a clear explanation of efficiency that is worth a read.
- Thomas Liu's article on the fundamental trade-offs between estimation and detection. Must read.
Tor Wager's article on Genetic Algoirthms
- The background on efficiency issues is worth a read even if you are not interested in Genetic Algorithms.
See also DesignEfficiency pages on the imaging wiki.
Tools
- To optimize sequences
- Genetic Algorithm SPM toolbox (Tor Wager)
- SPM toolbox for assessing collinearity (Matthijs Vink)
See CodeShare for a short script that allows you to check your own design efficiency.