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| * [wiki:LearningMatlab Matlab]. Useful for advanced work with SPM, and in understanding how SPM analyses neuroimaging data. Useful also for custom analyses with image data * [wiki:UsingSpm SPM] - Various guides on the theory and practice of SPM. * [wiki:UsingAnalyze AnalyzeAVW] - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering. It will only run on the Solaris machines, if atall. Please contact MatthewBrett if you need this program. * [[Anchor(mricro)]] Chris Rorden's [http://www.psychology.nottingham.ac.uk/staff/cr1/mricro.html MRIcro] - an excellent free, functional, and simple program for viewing neuroimages. Download to a windows machine to run locally. To start on the linux systems, use: {{{ startmricro }}} * [http://www.psychology.nottingham.ac.uk/staff/cr1/mritut.html MRIcro tutorial], with instructions on creating a region of interest, and prepare scans of damaged brains for spatial normalisation. * Krish Singh's [http://www.psychology.nottingham.ac.uk/staff/cr1/mri3dtut.html mri3d] - an excellent display tool, particularly for rendering of results onto brain surfaces. |
* [wiki:LearningMatlab Matlab]. Useful for advanced work with SPM, and in understanding how SPM analyses neuroimaging data. Useful also for custom analyses with image data * [wiki:SpmInformation SPM] - information on using SPM. * [wiki:UsingAnalyze AnalyzeAVW] - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering. At the CBU, it will only run on the Solaris machines, if atall. Please contact MatthewBrett if you need this program. * [[Anchor(mricro)]] Chris Rorden's [wiki:MriCro MRIcro] * Krish Singh's [http://www.psychology.nottingham.ac.uk/staff/cr1/mri3dtut.html mri3d] - an excellent display tool, particularly for rendering of results onto brain surfaces. |
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| * [http://www.sourceforge.net pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format] | * [http://pvconv.sourceforge.net pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format] |
Software for imaging at the CBU
[wiki:LearningMatlab Matlab]. Useful for advanced work with SPM, and in understanding how SPM analyses neuroimaging data. Useful also for custom analyses with image data
[wiki:SpmInformation SPM] - information on using SPM.
[wiki:UsingAnalyze AnalyzeAVW] - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering. At the CBU, it will only run on the Solaris machines, if atall. Please contact MatthewBrett if you need this program.
Anchor(mricro) Chris Rorden's [wiki:MriCro MRIcro]
Krish Singh's [http://www.psychology.nottingham.ac.uk/staff/cr1/mri3dtut.html mri3d] - an excellent display tool, particularly for rendering of results onto brain surfaces.
[http://www.psychology.nottingham.ac.uk/staff/cr1/dicom.html freeware DICOM viewer and information], again for Windows, again by Chris Rorden
[wiki:ImageViewer Viewer] - a simple matlab image viewer - now very old
- [wiki:Ana4Dto3D ana4dto3d] - a tiny command line utility to convert Analyze 4D files to a series of 3D files, as well as byte swapping as required
[http://pvconv.sourceforge.net pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format]
[http://www.fmrib.ox.ac.uk/fsl FSL] - the Oxford FMRIB software library for analyzing functional MRI and diffusion images.
See also [wiki:ReadingOnlineDocs Software and help on reading documents online] - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files.