1172024-11-05 13:14:33ClareCook1162024-04-30 10:50:56DaceApsvalka1152024-04-30 10:50:10DaceApsvalka1142024-04-30 10:46:44DaceApsvalka1132023-02-14 12:28:48DaceApsvalka1122020-12-01 15:32:50JohanCarlin1112020-12-01 14:34:26JohanCarlinAdd neuroconda1102020-12-01 14:19:29JohanCarlin1092020-10-23 15:34:21OlafHauk1082018-10-02 13:44:39kalm1072018-06-11 08:58:41JohanCarlinRemove archaic references to solaris.1062017-12-06 16:16:35LucyMacGregor1052017-05-18 09:24:47JohanCarlinadded node.js/bids-validator support (new on imaging/local/software)1042017-01-03 17:17:21JohanCarlin1032017-01-03 17:14:40JohanCarlin1022015-10-12 10:33:15TiborAuer1012015-10-12 10:30:40TiborAuer1002015-10-12 10:28:11TiborAuer992015-10-12 10:27:48TiborAuer982015-07-30 18:20:06RussellThompson972015-07-30 18:18:37RussellThompson962015-07-30 18:13:50RussellThompson952015-07-30 18:11:18RussellThompson942015-07-30 18:08:46RussellThompson932015-07-30 18:08:02RussellThompson922015-07-30 18:06:19RussellThompson912015-07-30 18:04:14RussellThompson902015-07-30 18:01:42RussellThompson892015-07-30 17:59:47RussellThompson882015-07-30 17:58:31RussellThompson872015-07-30 17:58:16RussellThompson862015-07-30 17:57:05RussellThompson852015-02-06 13:39:32MaartenVanCasteren842015-02-06 13:38:51MaartenVanCasteren832014-12-10 15:36:53TiborAuer822014-12-10 15:36:32TiborAuer812014-12-10 15:36:16TiborAuer802014-12-10 09:59:03OlafHauk792014-12-10 09:58:42OlafHauk782013-10-09 16:37:41OlafHauk772013-05-21 13:42:17OlafHauk762013-05-21 13:41:27OlafHauk752013-04-24 13:14:52TiborAuer742013-03-07 21:23:23localhostconverted to 1.6 markup732012-07-24 12:48:56YaaraErez722012-04-12 11:20:41RikHenson712012-03-27 10:36:26DennisNorris702012-02-22 19:11:22YaaraErez692011-10-03 17:29:14YaaraErez682011-07-04 15:42:44YaaraErez672011-07-04 15:18:00YaaraErez662011-05-25 15:27:51YaaraErez652011-05-24 18:24:45RikHenson642011-05-24 18:06:18YaaraErez632011-05-24 16:48:10DennisNorris622011-05-24 16:23:52YaaraErez612011-05-24 16:20:19YaaraErez602011-05-24 16:18:43YaaraErez592011-05-24 16:09:07YaaraErez582011-05-24 16:07:42YaaraErez572011-05-24 16:07:10YaaraErez562011-05-24 16:06:29YaaraErez552011-05-24 16:01:34YaaraErez542011-05-24 15:53:13YaaraErez532011-04-11 09:15:41YaaraErez522011-01-27 17:52:26JonathanPeelle512011-01-22 20:49:04JonathanPeelle502009-11-10 11:29:03MartinMonti492009-10-16 16:41:15RhodriCusack482009-10-16 16:40:23RhodriCusack472009-10-16 10:36:12RhodriCusack462009-08-07 10:59:41DanielWakeman452009-08-04 09:21:33DanielWakeman442009-08-04 09:20:36DanielWakeman432009-08-04 09:19:50DanielWakeman422009-08-01 18:57:40JonathanPeelleadded link to FieldtripInformation412009-07-16 00:16:54RhodriCusack402009-07-16 00:15:49RhodriCusack392009-07-16 00:15:13RhodriCusack382009-07-16 00:13:11RhodriCusack372009-07-06 11:33:18DanielWakeman362009-07-06 11:31:29DanielWakeman352009-07-06 10:38:01DanielWakeman342009-06-30 11:45:56JonathanPeelle332009-06-30 11:45:34JonathanPeelle322009-06-30 11:45:14JonathanPeelleadded FieldTrip312009-06-30 09:03:16RhodriCusack302009-06-30 09:02:48RhodriCusack292009-06-30 09:02:16RhodriCusack282009-06-09 15:05:20DanielWakeman272009-06-09 15:04:18DanielWakeman262009-06-09 15:02:04DanielWakeman252009-06-09 14:57:44DanielWakeman242007-05-09 11:50:10devel03.mrc-cbu.cam.ac.uk232007-05-09 11:49:59devel03.mrc-cbu.cam.ac.uk222007-05-05 11:13:44host86-148-55-122.range86-148.btcentralplus.com212007-05-05 11:13:31host86-148-55-122.range86-148.btcentralplus.com202007-05-05 11:11:38host86-148-55-122.range86-148.btcentralplus.com192007-05-01 15:43:30devel03.mrc-cbu.cam.ac.uk182007-04-30 10:19:49devel03.mrc-cbu.cam.ac.uk172007-03-01 00:40:07host86-136-197-103.range86-136.btcentralplus.com162006-10-11 11:02:25devel03.mrc-cbu.cam.ac.uk152006-08-17 10:00:04cmbg-cache-2.server.ntli.net142006-08-16 13:18:06RhodriCusack132006-08-16 10:25:29RhodriCusack122006-07-31 08:21:48cmbg-cache-2.server.ntli.net112006-07-29 22:51:47cmbg-cache-2.server.ntli.net102006-07-25 14:04:22devel03.mrc-cbu.cam.ac.uk92006-07-24 15:51:49cmbg-cache-2.server.ntli.net82006-07-24 15:51:33cmbg-cache-2.server.ntli.net72006-07-06 13:21:51devel03.mrc-cbu.cam.ac.uk62006-07-06 13:19:13devel03.mrc-cbu.cam.ac.uk52006-07-06 11:38:28devel03.mrc-cbu.cam.ac.uk42006-07-06 11:18:56devel03.mrc-cbu.cam.ac.uk32006-07-06 11:16:15devel03.mrc-cbu.cam.ac.uk22006-07-06 11:16:04devel03.mrc-cbu.cam.ac.uk12006-07-04 14:59:09Scripting Subsystem

Scientific software is managed by members of the imaging community (see below) and by members of the computing group. For queries concerning specific software packages, the people listed below are the best contact in the first instance. On the linux compute cluster, scientific software packages are installed in /imaging/local/software/<package name>/, e.g. /imaging/local/software/fsl. These package directories contain sub-directories for each different version, and then sometimes sub-directories for specific architectures, e.g. /imaging/local/software/fsl/v5.0.8/x86_64 contains the 64 bit version of FSL 5.0.8. General requests can be sent to members of the Methods group, including Olaf Hauk and Dace Apšvalka. General IT requests should be sent to IT help. They will reach the whole IT team, who will decide what to do with them. The following scientists volunteered to support particular scientific software packages. They can be contacted about computing-related problems, e.g. with respect to updates, missing libraries/toolboxes etc. (note: this does not include analysis support). Software at the CBU Package/Tool Link Contact conda environments Dace Apšvalka fMRIPrep website, CBU information Dace Apšvalka scansync, ScannerSynch, MEGSynch ScannerSynch Dace Apšvalka EEG Lab Fieldtrip FieldtripInformation FieldtripAnalysis Olaf Hauk Freesurfer FreeSurferAnalysis Kristjan Kalm, Marta Correia, Olaf Hauk,Dace Apšvalka FSL Fsl information Marta Correia Camino Marta Correia Real Time MRI Marta Correia,Daniel Mitchell MNE (-Python) MNE Olaf Hauk SPM Spm information (FMRI) SpmAnalysis (MEG/EEG) Rik Henson,Dace Apšvalka aa deprecated aa Daniel Mitchell Elekta Neuromag NeuromagSoftware Olaf Hauk Matlab Dace Apšvalka,Rik Henson,Russell Thompson R Dennis Norris, Dace Apšvalka,Peter Watson Python Dennis Norris,Dace Apšvalka C++ Dennis Norris E-Prime Presentation SPSS Peter Watson

See our Beginner's pages for tutorials etc., or Learning Matlab for how to learn and use matlab. Matlab runs on all the unit imaging Linux machines.

SPM: see Spm Information for general information on SPM, and Spm Versions for instructions on running SPM at the CBU. FSL: see Fsl Information AFNI: see Afni Information Brain Visa / Anatomist: see Brain Visa Information Freesurfer: Freesurfer Information MRIcro: see MriCro

MarsBar Snpm Information

AnalyzeAVW - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering. At the CBU, it will only run on the Solaris machines, if atall. Please contact MatthewBrett if you need this program. Chris Rorden's MRIcro - start with startmricro on the Linux machines. Krish Singh's mri3d - an excellent display tool, particularly for rendering of results onto brain surfaces. freeware DICOM viewer and information, again for Windows, again by Chris Rorden ImageViewer - a simple matlab image viewer - now very old ana4dto3d - a tiny command line utility to convert Analyze 4D files to a series of 3D files, as well as byte swapping as required pvconv - a perl command line utility to convert Bruker data format to Analyze image format FSL - the Oxford FMRIB software library for analyzing functional MRI and diffusion images. See also Software and help on reading documents online - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files.

gimp - Graphics viewing and editing program; the Linux version of Photoshop acrobat - PDF viewer. mozilla - web browser nedit, emacs - text editors kghostview - ps / psf / eps viewer useful for SPM postscript files eog - convenient image viewer Many other packages are available from the menu in the bottom right of the windowing environments.