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| [[Anchor(mricro)]] Chris Rorden's [http://www.psychology.nottingham.ac.uk/staff/cr1/mricro.html MRIcro] - an excellent free, functional, and simple program for viewing neuroimages. It runs on Windows only. | [[Anchor(mricro)]] Chris Rorden's [http://www.psychology.nottingham.ac.uk/staff/cr1/mricro.html MRIcro] - an excellent free, functional, and simple program for viewing neuroimages. Download to a windows machine to run locally. To start on the linux systems, use: {{{ startmricro }}} |
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| * [http://www.mrc-cbu.cam.ac.uk/Imaging/Common/pvconv.shtml pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format] * [http://bishopw.loni.ucla.edu/AIR5/general.html AIR] - the Automated Image Realignment program, by Roger Woods * [wiki:Mpr mpr] - coregistration software, for matching MRIs to PET scans, CT scans etc in any combination. mpr is more robust than SPM for difficult coregistrations, including those where the brain is damaged. * [wiki:ReadingOnlineDocs Software and help on reading documents online] - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files. Matthew Brett 7/10/99 |
* [http://www.sourceforge.net pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format] * [http://www.fmrib.ox.ac.uk/fsl FSL] - the Oxford FMRIB software library for analyzing functional MRI and diffusion images. * See also [wiki:ReadingOnlineDocs Software and help on reading documents online] - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files. |
Software for imaging at the CBU
[wiki:LearningMatlab Matlab]. Useful for advanced work with SPM, and in understanding how SPM analyses neuroimaging data. Useful also for custom analyses with image data
[wiki:UsingSpm SPM] - Various guides on the theory and practice of SPM.
[wiki:UsingAnalyze AnalyzeAVW] - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering.
Anchor(mricro) Chris Rorden's [http://www.psychology.nottingham.ac.uk/staff/cr1/mricro.html MRIcro] - an excellent free, functional, and simple program for viewing neuroimages. Download to a windows machine to run locally. To start on the linux systems, use:
startmricro
[http://www.psychology.nottingham.ac.uk/staff/cr1/mritut.html MRIcro tutorial], with instructions on creating a region of interest, and prepare scans of damaged brains for spatial normalisation.
Krish Singh's [http://www.psychology.nottingham.ac.uk/staff/cr1/mri3dtut.html mri3d] - an excellent display tool, particularly for rendering of results onto brain surfaces.
[http://www.psychology.nottingham.ac.uk/staff/cr1/dicom.html freeware DICOM viewer and information], again for Windows, again by Chris Rorden
[wiki:ImageViewer Viewer] - a simple matlab image viewer - now very old
- [wiki:Ana4Dto3D ana4dto3d] - a tiny command line utility to convert Analyze 4D files to a series of 3D files, as well as byte swapping as required
[http://www.sourceforge.net pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format]
[http://www.fmrib.ox.ac.uk/fsl FSL] - the Oxford FMRIB software library for analyzing functional MRI and diffusion images.
See also [wiki:ReadingOnlineDocs Software and help on reading documents online] - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files.