Diff for "IntroductionNeuroimagingLectures" - Methods
location: Diff for "IntroductionNeuroimagingLectures"
Differences between revisions 403 and 521 (spanning 118 versions)
⇤ ← Revision 403 as of 2021-11-09 12:44:14 →
Size: 4888
Editor: OlafHauk
Comment:
← Revision 521 as of 2024-02-19 09:44:51 → ⇥
Size: 7454
Editor: OlafHauk
Comment:
Deletions are marked like this. Additions are marked like this.
Line 2: Line 2:
== Lent Term 2022 ==
== Note: This schedule is NOT FINALISED yet - details TBA ==
We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation in January/February 2022. These events will happen online on Mondays (am and pm) and on Tuesdays (am), and will take 1-2 hours. They are free and open to researchers from Cambridge (from cam.ac.uk domain). Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk .		 We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation in January/February 2024. These events will happen in person in the CBU Lecture Theatre on Mondays and Tuesdays and will take 1-2 hours. They are free and open to all researchers from Cambridge.They will happen in the CBU's Lecture Theatre.

Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk .
Line 8: Line 8:
Please contact OlafHauk with questions and feedback. Please contact OlafHauk with questions and feedback
Line 11: Line 11:
||<tablewidth="100%"10% style="text-align:center;vertical-align:middle">'''Jan 24 ''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''EEG/MEG I – Overview and pre-processing''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1.ipynb|previous notebook]], [[attachment:Olaf EEGMEG1 25Jan21.pdf|slides]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''EEG/MEG II – Head modelling and source estimation''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1.ipynb|previous notebook]], [[attachment:Olaf EEGMEG2 25Jan21.pdf|slides]] ||
||<10% style="text-align:center;vertical-align:middle">'''Jan 25 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''EEG/MEG III – Time-frequency analysis functional connectivity''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1.ipynb|previous notebook]], [[attachment:Olaf EEGMEG3_26Jan21.pdf|slides]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Tue''' (!) '''Jan 9''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''A Field Day - Some Physics You May Find Useful''' <<BR>> Olaf Hauk<<BR>>[[attachment:Olaf Some Physics 9Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center"> ||
Line 18: Line 17:
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Jan 31''' ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''MRI Physics I''' <<BR>> Marta Correia ||<45% style="text-align:center;text-align:center">13-15:00 (!): <<BR>> '''MRI Physics II''' <<BR>> Marta Correia ||
||<style="text-align:center;vertical-align:middle">'''Feb 1 ''' ||<45% style="text-align:center;text-align:center">13-15.00: <<BR>> '''Introduction to diffusion MRI''' <<BR>> Marta Correia ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 15''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Brain Anatomy for Cognitive Neuroscientists'''<<BR>> Moataz Assem [[attachment:Assem_anatomy_lecture_15Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MRI Physics I''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsI_IntroToNeuroImaging2024.pdf|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Tue''' '''Jan 16''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MRI Physics II''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsII_IntroToNeuroImaging2024.pdf|Slides]] ||<45% style="text-align:center;text-align:center"> ||
Line 25: Line 24:
||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Feb 7''' ||<45% style="text-align:center;text-align:center">Methods Day ||<45% style="text-align:center;text-align:center">Methods Day ||
||<style="text-align:center;vertical-align:middle">'''Feb 8 ''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''Brain Stimulation''' <<BR>> TBA <<BR>> [[attachment:Scrivener_IntroToTMS_010221.pdf|slides]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Jan 22''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''Introduction to diffusion MRI''' <<BR>> Marta Correia<<BR>> [[attachment:IntroductionToDiffusionMRI_Part1_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part1.pdf|Slides_preprocessing]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Advanced Diffusion MRI ''' <<BR>> Marta Correia <<BR>> [[attachment:IntroductionToDiffusionMRI_Part2_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part2.pdf|Slides_TBSS]] ||
||<style="text-align:center;vertical-align:middle">'''Jan 23''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI: Introduction, Experimental design & Data ''' <<BR>> Dace Apšvalka <<BR>> [[https://github.com/dcdace/fMRI_training/|materials]] ||<45% style="text-align:center;text-align:center"> ||
Line 32: Line 31:
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 14 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI I – Preprocessing''' <<BR>> Dace Apsvalka<<BR>> [[attachment:methods_1_preprocessing.pdf|previous slides]] [[https://github.com/jooh/notebook_bids_OSD2018|workshop]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''fMRI II – GLM and experimental design''' <<BR>> Dace Apsvalka <<BR>>[[attachment:methods_2_glm.pdf|previous slides]] [[attachment:methods_2_glm_workshop.zip|workshop]] (requires Matlab + SPM12) ||
||<style="text-align:center;vertical-align:middle">'''Feb 15 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI III – Group analysis and statistical inference''' <<BR>> Dace Apsvalka [[attachment:methods_3_group_inference.pdf|previous slides]] [[attachment:methods_3_group_inference_workshop.zip|workshop]] (CBU imaging system only, sorry) ||<45% style="text-align:center;text-align:center">- ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Jan 29 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI:''' '''Pre-processing & Analysis'''<<BR>> Dace Apšvalka<<BR>>[[https://github.com/dcdace/fMRI_training/|materials]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''fMRI:''' '''Practical demo '''<<BR>> Dace Apšvalka<<BR>>[[https://github.com/dcdace/fMRI_training/|materials]] ||
||<style="text-align:center;vertical-align:middle">'''Jan 30 ''' ||<45% style="text-align:center;text-align:center">10-12:00:<<BR>> '''PET imaging'''<<BR>> Maura Malpetti <<BR>> ||<45% style="text-align:center;text-align:center"> ||
Line 39: Line 38:
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 21 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Multimodal Imaging''' <<BR>> Rik Henson <<BR>>[[https://www.youtube.com/watch?v=F0Ex9s-GZyg|previous video]] [[attachment:CBUTraining_Henson_Multimodal.pdf|slides]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''Brain Connectivity''' <<BR>> Rik Henson<<BR>> [[https://www.youtube.com/watch?v=USTmPsSMYhs|previous video]] [[attachment:CBUTraining_Henson_Connectivity.pdf|slides]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 22 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Graph Theory''' <<BR>> TBA<<BR>> [[attachment:GraphTheoryWorkshop_2021.pdf|previous slides]] ||<45% style="text-align:center;text-align:center">- ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 5''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''EEG/MEG I – Overview and pre-processing''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG1_5Feb24.pdf|slides]], [[attachment:EEGMEG1.mp4|video]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''EEG/MEG II – Head modelling and source estimation''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG2_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG2_5Feb24.pdf|slides]], [[attachment:EEGMEG2_SourceEstimation.mp4|video]] ||
||<10% style="text-align:center;vertical-align:middle">'''Feb 6''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''EEG/MEG III – Time-frequency analysis and functional connectivity''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG3_25Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG3_5Feb24.pdf|slides]], [[attachment:EEGMEG3.mp4|video]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 12 ''' ||<45% style="text-align:center;text-align:center">10-12.00:I<<BR>>'''Functional connectivity in fMRI'''<<BR>>Petar Raykov <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#connectivityfmri|materials]] [[https://www.youtube.com/watch?v=1VOKsWWLgjk|video]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''Effective Connectivity for fMRI (DCM)''' <<BR>> Rik Henson & Pranay Yadav<<BR>>[[attachment:CBU-Neuroimaging-Training-DCM-fMRI-demo-slides.pdf|DCM fMRI demo slides]], [[attachment:CBU-Neuroimaging-Training-DCM-PEB-demo-slides.pdf|DCM PEB demo slides]], [[https://youtu.be/1VOKsWWLgjk|video]], [[attachment:CBU-Neuroimaging-Training-DCM-fMRI.pdf|document]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 13 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Effective Connectivity for MEG/EEG (DCM)''' <<BR>> Pranay Yadav & Rik Henson <<BR>> [[attachment:CBU-Neuroimaging-Training-DCM-MEEG-demo-slides.pdf|DCM MEEG demo slides]], [[attachment:CBU-Neuroimaging-Training-DCM-PEB-demo-slides.pdf|DCM PEB demo slides]], [[https://www.youtube.com/watch?v=HNaAvKmVCYo|video]], [[attachment:CBU-Neuroimaging-Training-DCM-MEEG.pdf|document]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 19''' ||<45% style="text-align:center;text-align:center">10.12.00:<<BR>> '''Graph Theory''' <<BR>> Isaac Sebenius<<BR>> [[attachment:COGNESTIC23-presentation_Sebenius.pdf|slides]]<<BR>> ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MVPA and RSA''' <<BR>> Daniel Mitchell <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2022#rsa1|materials for The Decoding Toolbox]] <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#rsa2|materials for the RSA Toolbox]] [[attachment:INM24_MVPA_djm.pptx|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 20''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Brain Stimulation''' <<BR>> Elizabeth Michael <<BR>> previous [[attachment:IntroToTMS_JJ_2022.pdf|slides]] [[attachment:IntroToTMS_JJ_2022.mov|video]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 26''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Neural Network Modelling '''<<BR>> Jascha Achterberg <<BR>> ||<45% style="text-align:center;text-align:center"> ||

Introduction To Neuroimaging Methods

We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation in January/February 2024. These events will happen in person in the CBU Lecture Theatre on Mondays and Tuesdays and will take 1-2 hours. They are free and open to all researchers from Cambridge.They will happen in the CBU's Lecture Theatre.

Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk .

Our workshops are targeted at master’s/PhD students and post-doctoral researchers from the Cambridge cognitive neuroscience community. Look here for other training opportunities in and around Cambridge.

Please contact OlafHauk with questions and feedback


Tue (!) Jan 9

10-12.00:
A Field Day - Some Physics You May Find Useful
Olaf Hauk
PDF


Mon Jan 15

10-12.00:
Brain Anatomy for Cognitive Neuroscientists
Moataz Assem PDF

14-16.00:
MRI Physics I
Marta Correia
Slides

Tue Jan 16

10-12.00:
MRI Physics II
Marta Correia
Slides


Jan 22

10-12.00:
Introduction to diffusion MRI
Marta Correia
Slides_lecture Slides_preprocessing

14-16.00:
Advanced Diffusion MRI
Marta Correia
Slides_lecture Slides_TBSS

Jan 23

10-12:00:
fMRI: Introduction, Experimental design & Data
Dace Apšvalka
materials


Jan 29

10-12:00:
fMRI: Pre-processing & Analysis
Dace Apšvalka
materials

14-16:00:
fMRI: Practical demo
Dace Apšvalka
materials

Jan 30

10-12:00:
PET imaging
Maura Malpetti


Feb 5

10-12.00:
EEG/MEG I – Overview and pre-processing
Olaf Hauk
Jupyter notebook, slides, video

14-16.00:
EEG/MEG II – Head modelling and source estimation
Olaf Hauk
Jupyter notebook, slides, video

Feb 6

10-12:00:
EEG/MEG III – Time-frequency analysis and functional connectivity
Olaf Hauk
Jupyter notebook, slides, video


Feb 12

10-12.00:I
Functional connectivity in fMRI
Petar Raykov
materials video

14-16:00:
Effective Connectivity for fMRI (DCM)
Rik Henson & Pranay Yadav
DCM fMRI demo slides, DCM PEB demo slides, video, document

Feb 13

10-12:00:
Effective Connectivity for MEG/EEG (DCM)
Pranay Yadav & Rik Henson
DCM MEEG demo slides, DCM PEB demo slides, video, document


Feb 19

10.12.00:
Graph Theory
Isaac Sebenius
slides

14-16.00:
MVPA and RSA
Daniel Mitchell
materials for The Decoding Toolbox
materials for the RSA Toolbox Slides

Feb 20

10-12.00:
Brain Stimulation
Elizabeth Michael
previous slides video


Feb 26

10-12.00:
Neural Network Modelling
Jascha Achterberg

None: IntroductionNeuroimagingLectures (last edited 2024-02-19 09:44:51 by OlafHauk)