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|* [[AutomaticAnalysisIntroduction|aa]] - automating SPM analyses||* [[AA|aa]] - automating SPM analyses|
This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.
Getting started with SPM
SPM tips and tools
Normalizing anatomical MRI scans of damaged brains using SPM and MRIcro.
MaskedEpiNormalization - using the EPIs for spatial normalization.
DisplaySlices - display multiple image slices with activation data using matlab / SPM
Changing the location of images in an SPM design with SpmAnaCd
SpmTips - not otherwise classified tips and fixes
TrimmingImages using SPM
Programming with SPM
SpmWithPentium4 - tuning SPM for the Pentium 4 chip
SpmBenchmarks - benchmarks from machines running SPM
TestsNewConfigJuly2009 - testing different configurations of Linux with various neuroimaging packages
2009/08/25 Default spm 8 to Matlab2009a
now defaults to matlab2009a as this offers the full functionality
Also, you may do commands like
spm 5 matlab2009a
2008/11/26 Update Juelich's Anatomy toolbox for SPM 5
Obtained a new pre-release version of the toolbox, containing new maps for the parietal lobe. Replaced the old version [RC]
2008/10/6 Installed Juelich's Anatomy toolbox into SPM 5
2008/08/13 Added highmemory switch to spm
If you launch spm with you will be sent to a machine with 16 GB of RAM.
2008/02/07 Added function HeadMask.m to /imaging/local/spm/common_spm5andabove
This function attempts to mask out the vitamin E capsules from T1 weighted structurals. This is useful before producing a scalp mesh, which may otherwise be distorted. It has been tested on seven subjects, never removing anything it shouldn't, and successfully removing the vitamin E capsules in six of the seven cases. (Including one patient with lesions; use at own risk; does NOT seem to improve normalisation to MNI space.)
2008/02/06 Patched spm_getSPM manually
Fixed bug when saving design matrix from contrast manager as identified by Catherine Marie-Longtin, and solved by Ferath Kherif
put cd(SPM.swd) at line 200, just after the code : SPM.swd = swd; at line 199.
Getting more help
For help on SPM and other analysis topics, see AnalysisHelp