This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.

= Getting started with SPM =
 * SpmVersions - and how to launch them at the CBU
 * SpmManuals
= SPM tips and tools =
 * [[http://www.sph.sc.edu/comd/rorden/mritut.html|Normalizing anatomical MRI scans of damaged brains]] using SPM and MRIcro.
 * MaskedEpiNormalization - using the EPIs for spatial normalization.
 * SpmPlottingAdjustedData
 * DisplaySlices - display multiple image slices with activation data using matlab / SPM
 * Changing the location of images in an SPM design with SpmAnaCd
 * SpmTips - not otherwise classified tips and fixes
 * TrimmingImages using SPM
= Automating SPM =
 * [[AA|aa]] - automating SPM analyses
 * SpmBatch - batching SPM jobs
= Programming with SPM =
 * SpmGraphics - using the SPM output graphics for making figures
 * BasicProgrammingWithSpm
= Benchmarking SPM =
 * SpmWithPentium4 - tuning SPM for the Pentium 4 chip
 * [[http://gnumex.sourceforge.net/|Compiling SPM on Windows]]
 * SpmBenchmarks - benchmarks from machines running SPM
 * TestsNewConfigJuly2009 - testing different configurations of Linux with various neuroimaging packages
= Recent Updates =
== 2009/08/25 Default spm 8 to Matlab2009a ==
{{{
spm 8
}}}
now defaults to matlab2009a as this offers the full functionality

Also, you may do commands like

{{{
spm 5 matlab2009a
}}}
[RC]

== 2008/11/26 Update Juelich's Anatomy toolbox for SPM 5 ==
Obtained a new pre-release version of the toolbox, containing new maps for the parietal lobe. Replaced the old version [RC]

== 2008/10/6 Installed Juelich's Anatomy toolbox into SPM 5 ==
[RC]

== 2008/08/13 Added highmemory switch to spm ==
If you launch spm with {{ spm highmemory }} you will be sent to a machine with 16 GB of RAM.

[RC]

= 2008/02/07 Added function HeadMask.m to /imaging/local/spm/common_spm5andabove =
This function attempts to mask out the vitamin E capsules from T1 weighted structurals. This is useful before producing a scalp mesh, which may otherwise be distorted. It has been tested on seven subjects, never removing anything it shouldn't, and successfully removing the vitamin E capsules in six of the seven cases. (Including one patient with lesions; use at own risk; does NOT seem to improve normalisation to MNI space.)

[DannyMitchell]
== 2008/02/06 Patched spm_getSPM manually ==
Fixed bug when saving design matrix from contrast manager as identified by Catherine Marie-Longtin, and solved by Ferath Kherif

{{{
put
cd(SPM.swd) at line 200,
just after the code : SPM.swd = swd; at line 199.
}}}
[RC]

= Getting more help =
For help on SPM and other analysis topics, see AnalysisHelp