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= The CBU Wikis = = The CBU Wikis =jkj
'''The CBU Imaging Wikis host a wealth of information on the design and analysis of EEG/MEG and fMRI studies.'''
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In summer 2007, a magnetoencephalography (MEG) device became fully operational at the CSBU, complementing the [[http://www.mrc-cbu.cam.ac.uk/EEG/|EEG lab]] established in 2000 and the [[CbuMriFacility:CbuMriFacility|MRI scanner]] built in 2005. The device installed at the CBU is a [[VectorviewDescription|306-channel Vectorview]] system ([[http://www.elekta.com/healthcare_international_elekta_neuromag.php|Elekta Neuromag]], Helsinki) which combines 204 planar gradiometers, 102 magnetometers and 124 EEG channels providing comprehensive high-density coverage of electromagnetic brain activity. Please participate in our '''[[https://www.surveymonkey.com/s/3JL2CZX|Methods Skills Survey]]''', which will help the development of future training events at the CBU. It is anonymous and should take about 10-15 minutes.Please only participate once.
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Using MEG technology, we are now able to record brain activation in real time and produce "activation films" that indicate the spreading of excitation through different parts of the brain. The activation waves, or spatio-temporal patterns, can be related to cognitive processes, such as language comprehension, object analysis or motor planning. Some of the links below also lead to our [[http://imaging.mrc-cbu.cam.ac.uk/methods/|Methods Wiki]] and [[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]].
||||||||||||||<tablewidth="100%"style="TEXT-ALIGN:center"> ||
||||||||||||||<#e8e8e8 style="TEXT-ALIGN:center">'''~+General+~''' ||
||||||||||||||<style="TEXT-ALIGN:center"> ||
||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/UsingVNC|VNC]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AvailableSoftware|Software]]''' <<BR>><<BR>> '''[[CbuMethods:http://wiki.mrc-cbu.cam.ac.uk/methods/unixsurvivalguide|Unix Survival Guide]]''' ||<style="TEXT-ALIGN:center">'''[[http://intranet.mrc-cbu.cam.ac.uk/computing/|CBU Computing Intranet]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/Beginners/MatlabIntroCBU?action=AttachFile&do=get&target=RussellComputing.pdf|Overview CBU Computing]]''' ||<style="TEXT-ALIGN:center">'''[[CbuMeg:Beginners|If you are new...]]'''<<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/MatlabLecturesSchedule|Matlab Intro]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/SignalAnalysisMatlabSchedule|Signal Processing Intro]]''' <<BR>><<BR>> '''[[CbuMethods:education|Courses/Lectures]]''' <<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/methods/IntroductionNeuroimagingLectures|Introduction to Neuroimaging]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/LoadShare|Load Share]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/ImagersInterestGroup|IIG]]''' <<BR>><<BR>>''' [[http://imaging.mrc-cbu.cam.ac.uk/imaging/IigSchedule|IIG Schedule]] '''<<BR>><<BR>>'''[[http://intranet.mrc-cbu.cam.ac.uk/administration/unit-committees/imc/|IMC]]''' <<BR>><<BR>> '''[[http://intranet.mrc-cbu.cam.ac.uk/imaging/mriadmin/|Internal Admin]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/methods/stimdatabases|Tools for stimulus generation]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/EyeTracking|Eye Tracking]]''' ||
||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/CBUInterestGroups|Interest Groups]]''' ||<style="TEXT-ALIGN:center">'''[[CbuMethods:NavigateOurWiki|Navigate our Wikis]]''' ||'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AvailableScripts|Scripts]]''' ||'''[[http://forum.mrc-cbu.cam.ac.uk/qa/|Community Support Forum]]''' || ||
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For an example, watch a movie of left-hemispheric [[attachment:MEG_Movie_VisualWord.wmv|brain activation evoked by a visually presented word]].
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= Shortcuts =
||||||||||||||<tablewidth="100%"style="text-align:center"> ||
||||||||||||||<#E0E0FF style="font-size:24;text-align:center">'''~+General+~''' ||
||||||||||||||<style="text-align:center"> ||
||<style="text-align:center;">'''[[CbuImaging:UsingVNC|VNC]]''' <<BR>><<BR>> '''[[CbuImaging:AvailableSoftware|Software]]''' <<BR>><<BR>> '''[[CbuMethods:unixsurvivalguide|Unix Survival Guide]]''' ||<style="text-align:center;">'''[[http://intranet.mrc-cbu.cam.ac.uk/computing/|CBU Computing Intranet]]''' <<BR>><<BR>> '''[[Beginners/MatlabIntroCBU?action=AttachFile&do=get&target=RussellComputing.pdf|Overview CBU Computing]]''' ||<style="text-align:center;">'''[[Beginners]]'''<<BR>><<BR>> '''[[CbuMethods:MatlabLecturesSchedule|Matlab Intro]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/SignalAnalysisMatlabSchedule|Signal Processing Intro]]''' <<BR>><<BR>> '''[[CbuMethods:education|Courses/Lectures]]''' <<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/methods/IntroductionNeuroimagingLectures|Introduction to Neuroimaging]]''' ||<style="text-align:center;">'''[[CbuImaging:LoadShare|Load Share]]''' ||<style="text-align:center;">'''[[CbuImaging:ImagersInterestGroup|IIG]]''' <<BR>><<BR>> '''[[CbuImaging:IigSchedule|IIG Schedule]]''' <<BR>><<BR>> '''[[http://intranet.mrc-cbu.cam.ac.uk/minutes/imc/|IMC]]''' <<BR>><<BR>> '''[[http://intranet.mrc-cbu.cam.ac.uk/imaging/|Internal Admin]]''' ||<style="text-align:center;">'''[[CbuMethods:stimdatabases|Tools for stimulus generation]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/EyeTracking|Eye Tracking]]''' ||
||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/statswiki|Statistics Wiki]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/CBUInterestGroups|Interest Groups]]''' ||<style="text-align:center;">'''[[CbuMethods:NavigateOurWiki|Navigate our Wikis]]''' ||[[http://intranet.mrc-cbu.cam.ac.uk/imaging/|intranet imaging pages]] ||
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||||||||||||||<#e8e8e8 style="TEXT-ALIGN:center">'''~+fMRI Imaging+~''' || ||||||||||||||<#e8e8e8 style="TEXT-ALIGN:center">'''~+[[http://imaging.mrc-cbu.cam.ac.uk/imaging/CbuImaging|(f)MRI]]+~''' ||
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||<style="TEXT-ALIGN:center">'''[[AnalysisPrinciples|Analysis Principles]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/|fMRI Handbook]]''' <<BR>><<BR>> '''[[SpmMiniCourse2008|SPM Mini Course]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc|SPM docus]]''' ||<style="TEXT-ALIGN:center">'''[[FreesurferGoodies|FreeSurfer]]''' ||<style="TEXT-ALIGN:center">'''[[ImagingSequences|Sequences]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery|Stimulus Delivery]]''' <<BR>><<BR>> '''[[CbuMethods:psychophysiology|Psychophysiology]]''' ||<style="TEXT-ALIGN:center">'''[[DataDiagnostics|Diagnostics]]''' ||<style="TEXT-ALIGN:center">'''[[PrinciplesStatistics|Stats Principles]]''' <<BR>><<BR>> '''[[PrinciplesRandomEffects|RFX]]''' <<BR>><<BR>> '''[[DesignEfficiency|Design Efficiency]]''' ||
||<style="TEXT-ALIGN:center">'''[[BrodmannAreas|Brodmann Areas]]''' <<BR>><<BR>> '''[[NeuroanatomyTutorial|Neuroanatomy Tutorial]]''' ||<style="TEXT-ALIGN:center">'''MarsBar''' ||<style="TEXT-ALIGN:center">'''[[MeetingsListsContacts|Meetings etc.]]''' ||<style="TEXT-ALIGN:center">'''[[MultiVoxelPatternAnalysis|MVPA]]''' ||<style="TEXT-ALIGN:center">'''[[AnalyzingDiffusion|DTI]]''' ||<style="TEXT-ALIGN:center">'''[[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html|SPM scripts]]''' ||
||<style="TEXT-ALIGN:center">'''[[MDsystem|The Multiple Demand System]]''' ||<style="TEXT-ALIGN:center">
[[attachment:djm_gradseminar_2013.ppt|Introduction to fMRI - graduate seminar slides]] ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center">'''[[AA|AA (ver. 4)]]''' ||
||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AnalysisPrinciples|Analysis Principles]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/|fMRI Handbook]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse|SPM Mini Course]]''' <<BR>><<BR>> '''[[http://www.fil.ion.ucl.ac.uk/spm/doc|SPM docus]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/FreesurferGoodies|FreeSurfer]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/ImagingSequences|Sequences]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery|Stimulus Delivery]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/methods/psychophysiology|Psychophysiology]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/DataDiagnostics|Diagnostics]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/PrinciplesStatistics|Stats Principles]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/PrinciplesRandomEffects|RFX]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/DesignEfficiency|Design Efficiency]]''' ||
||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/BrodmannAreas|Brodmann Areas]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/NeuroanatomyTutorial|Neuroanatomy Tutorial]]''' ||<style="TEXT-ALIGN:center">'''[[attachment:djm_gradseminar_2013.ppt|Introduction to fMRI - graduate seminar slides]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MarsBar|MarsBar]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MultiVoxelPatternAnalysis|MVPA]]''' ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/AnalyzingDiffusion|DTI]]''' ||<style="TEXT-ALIGN:center">'''[[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html|SPM scripts]]''' ||
||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MDsystem|The Multiple Demand System]]''' ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center"> ||<style="TEXT-ALIGN:center">'''[[http://imaging.mrc-cbu.cam.ac.uk/imaging/
AA|AA (V4)]]''' ||

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||||||||||||||<#E0E0FF style="font-size:24;text-align:center">'''~+MEG+~''' || ||||||||||||||<#E0E0FF style="font-size:24;text-align:center">'''~+[[http://imaging.mrc-cbu.cam.ac.uk/meg/CbuMeg|EEG/MEG]]+~''' ||
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||<style="text-align:center;">'''[[AnalyzingData|Analyzing Data]]''' ||<style="text-align:center;">'''[[SpmAnalysis|SPM5]]''' <<BR>><<BR>> '''[[SensorSpm|SensorSPM]]''' <<BR>><<BR>> '''[[Spm8Analysis|SPM8]]''' ||<style="text-align:center;">'''[[AnalyzingData/MNE_overview|MNE]]''' ||<style="text-align:center;">'''[[Maxfilter]]''' <<BR>><<BR>> '''[[MaxfilterMatlabScript|Script]]''' <<BR>><<BR>>'''[[maxdiagnost|Diagnostics]]''' <<BR>><<BR>>'''[[Maxfilter_V2.2|Maxfilter 2.2]]''' <<BR>><<BR>> ||<style="text-align:center;">'''[[RunningStudies|Running Studies]]''' ||<style="text-align:center;">'''[[NecessaryFormalities|Formalities]]'''<<BR>> <<BR>> '''[[MeetingsListsContacts|MEG-MC]]''' ||
||<style="text-align:center;">'''[[Beginners]]''' <<BR>> <<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/IntroEEGMEG|EEG Intro]]''' ||<style="text-align:center;">'''[[VectorviewDescription|Vectorview]]''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/StimulusDetails|Stimulus Delivery]]''' ||<style="text-align:center;">'''[[IntroductionEEGMEG|MEG day]]''' ||<style="text-align:center;">'''[[CbuEeg:|EEG Lab]]''' ||<style="text-align:center;">'''[[MailingLists|Mailing Lists, Events, Links]]''' ||<style="text-align:center;">'''[[MEGpapersCBU|CBU EEG/MEG publications]]''' <<BR>><<BR>> '''[[MEGpapers|EEG/MEG Literature]]''' ||
||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData|Analyzing Data]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/SpmAnalysis|SPM5]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/SensorSpm|SensorSPM]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/Spm8Analysis|SPM8]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_overview|MNE]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/Maxfilter|Maxfilter]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/MaxfilterMatlabScript|Script]]''' <<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/maxdiagnost|Diagnostics]]''' <<BR>><<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/Maxfilter_V2.2|Maxfilter 2.2]]''' <<BR>><<BR>> ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/RunningStudies|Lab Practicalities, Stimulus Presentation]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/NecessaryFormalities|Formalities]]'''<<BR>> <<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/MeetingsListsContacts|MEG-MC]]''' ||
||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/Beginners|If you are new...]]''' <<BR>> <<BR>>'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/IntroEEGMEG|EEG Intro]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/VectorviewDescription|Vectorview]]''' <<BR>> <<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/StimulusDetails|Stimulus Delivery]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/IntroductionEEGMEG|MEG day]]''' ||<style="text-align:center;">'''[[CbuEeg:|EEG Lab]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/MailingLists|Mailing Lists, Events, Links]]''' ||<style="text-align:center;">'''[[http://imaging.mrc-cbu.cam.ac.uk/meg/MEGpapersCBU|CBU EEG/MEG publications]]''' <<BR>><<BR>> '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/MEGpapers|EEG/MEG Literature]]''' ||
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'''[[http://www.mrc-cbu.cam.ac.uk/research/methods/imaginganalysis.html|Back to General Pages]].'''

= The CBU Wikis =jkj The CBU Imaging Wikis host a wealth of information on the design and analysis of EEG/MEG and fMRI studies.

Please participate in our Methods Skills Survey, which will help the development of future training events at the CBU. It is anonymous and should take about 10-15 minutes.Please only participate once.

Some of the links below also lead to our Methods Wiki and Statistics Wiki.

General

VNC

Software

Unix Survival Guide

CBU Computing Intranet

Overview CBU Computing

If you are new...

Matlab Intro

Signal Processing Intro

Courses/Lectures

Introduction to Neuroimaging

Load Share

IIG

IIG Schedule

IMC

Internal Admin

Tools for stimulus generation

Eye Tracking

Statistics Wiki

Interest Groups

Navigate our Wikis

Scripts

Community Support Forum


(f)MRI

Analysis Principles

fMRI Handbook

SPM Mini Course

SPM docus

FreeSurfer

Sequences

Stimulus Delivery

Psychophysiology

Diagnostics

Stats Principles

RFX

Design Efficiency

Brodmann Areas

Neuroanatomy Tutorial

Introduction to fMRI - graduate seminar slides

MarsBar

MVPA

DTI

SPM scripts

The Multiple Demand System

AA (V4)


EEG/MEG

Analyzing Data

SPM5

SensorSPM

SPM8

MNE

Maxfilter

Script

Diagnostics

Maxfilter 2.2

Lab Practicalities, Stimulus Presentation

Formalities

MEG-MC

If you are new...

EEG Intro

Vectorview

Stimulus Delivery

MEG day

EEG Lab

Mailing Lists, Events, Links

CBU EEG/MEG publications

EEG/MEG Literature

Hint: if you're using the search button on the left, be sure to press the "Text" button if you want to search the content of pages rather than just their titles.

None: WikiOverview (last edited 2021-02-17 12:49:52 by OlafHauk)