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October 14 '''Introduction to the CBSU computing system'''<<BR>>''Overview of CBSU computing resources; using/accessing the computing system; best practice in scientific computing.''<<BR>>[[attachment:2_CBUComputing.pdfPDF of the lecture]] Tibor Auer   October 14 '''Introduction to the CBU computing system'''<<BR>>''Overview of CBSU computing resources; using/accessing the computing system; best practice in scientific computing.''<<BR>>[[attachment:2_CBUComputing.pdfPDF of the lecture]] Tibor Auer  
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December 2 '''Visualisation in Matlab'''<<BR>>''Visualisation options in Matlab; creating and editing figures; plotting curves''<<BR>>[[attachment:MatlabVisualisationSlides.pdfPDF of the lecture  slides]]<<BR>>[[attachment:MatlabVisualisationHandouts.pdfPDF of the lecture  handouts]]<<BR>>[[attachment:MatlabVisualisation_examples.zipExample scripts]] Yaara Erez  December 9 '''Parallel Computing in Linux and Matlab''' Introduction to parallel computing; login and compute nodes; the qsub command <<BR>> [[attachment:computing_pres2014_cluster.pdfUsing the scheduler]]<<BR>>[[attachment:3_Parallel.pdfPDF of the lecture (MATLAB)]] <<BR>>[[attachment:3_MATLAB.zipmaterial (MATLAB)]] Russell Thompson (Linux),<<BR>>Tibor Auer (MATLAB)  
December 2 '''Parallel Computing in Linux and Matlab''' Introduction to parallel computing; login and compute nodes; the qsub command <<BR>> [[attachment:computing_pres2014_cluster.pdfUsing the scheduler]]<<BR>>[[attachment:3_Parallel.pdfPDF of the lecture (MATLAB)]] <<BR>>[[attachment:3_MATLAB.zipmaterial (MATLAB)]] Russell Thompson (Linux),<<BR>>Tibor Auer (MATLAB)  December 9 '''Visualisation in Matlab'''<<BR>>''Visualisation options in Matlab; creating and editing figures; plotting curves''<<BR>>[[attachment:MatlabVisualisationSlides.pdfPDF of the lecture  slides]]<<BR>>[[attachment:MatlabVisualisationHandouts.pdfPDF of the lecture  handouts]]<<BR>>[[attachment:MatlabVisualisation_examples.zipExample scripts]] Yaara Erez  
Introduction to Scientific Computing and Matlab
Below you will find the schedule of our “Introduction to Scientific Computing and Matlab” workshops, held in the CBSU West Wing Seminar Room on Wednesdays, 14.30, between October 2015 and January 2016.
Matlab is the Swiss Army Knife of data analysis: no matter whether you are analysing neuroimaging data, behavioural data or your latest bank statements, Matlab can make you do things you thought were never possible.
Any larger data analysis at the CBU, especially for neuroimaging data, is performed on our highperformance computer cluster, using the operating system Linux. Some of our workshops will cover the basics of our computing system, good research practice in scientific computing, basic linux commands and an introduction to parallel computing.
Our workshops are aimed at researchers with no or little prior experience to programming (in Matlab or otherwise). We are not intending to provide a full Matlab or Linux course, but we hope we can significantly facilitate the first few steps. For other options, see e.g. opportunities at Cambridge University (http://training.cam.ac.uk/ucs/), or online tutorials (http://imaging.mrccbu.cam.ac.uk/meg/Beginners).
Individual sessions of this workshop series will be advertised via our "skillstraining" mailing list (see below). To hear more about skillsoriented training opportunities at the CBU, please register on this mailing list: http://lists.mrccbu.cam.ac.uk/mailman/listinfo/skillstraining (NonCBU people can subscribe by sending an email to skillstrainingsubscribe (at) mrccbu (dot) cam (dot) ac (dot) uk).
You may want to have a look at other skilloriented training options.
Any suggestions of feedback on our previous lectures would be very welcome.
All sessions will take place in the West Wing Seminar Room, on Wednesdays at 14.30.They will take between 1 and 2 hours.
Date/Time 
Topic 
Presenter 
October 14 
Introduction to the CBU computing system 
Tibor Auer 
October 21 
Handson introduction to Linux 
Tibor Auer 
Break 


November 4 
Getting started with Matlab 
Yaara Erez 
November 11 
Basic Matlab commands I 
Yaara Erez 
November 18 
Basic Matlab commands II 
Olaf Hauk 
November 25 
Structuring and debugging Matlab code 
Daniel Mitchell 
December 2 
Parallel Computing in Linux and Matlab Introduction to parallel computing; login and compute nodes; the qsub command 
Russell Thompson (Linux), 
December 9 
Visualisation in Matlab 
Yaara Erez 