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||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 20''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Brain Anatomy for Cognitive Neuroscientists''' <<BR>>Moataz Assem <<BR>>[[attachment:Assem_CBU_anatomy_lecture_Jan2025.pdf|PDF]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Introduction to Statistics in Neuroimaging''' <<BR>> Rik Henson<<BR>> ||
||<style="text-align:center;vertical-align:middle">'''Tue Jan 21''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''A Field Day - Some Physics You May Find Useful''' <<BR>> Olaf Hauk<<BR>>[[attachment:Olaf Some Physics 9Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 19''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Brain Anatomy for Cognitive Neuroscientists''' <<BR>>Moataz Assem <<BR>>[[attachment:Assem_CBU_anatomy_lecture_Jan2025.pdf|PDF]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Introduction to Statistics in Neuroimaging''' <<BR>> Rik Henson<<BR>> ||
||<style="text-align:center;vertical-align:middle">'''Tue Jan 20''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''A Field Day - Some Physics You May Find Useful''' <<BR>> Olaf Hauk<<BR>>[[attachment:Olaf Some Physics 9Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center"> ||
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||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 27''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MRI Physics I''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsI_IntroToNeuroImaging2024.pdf|Slides]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MRI Physics II''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsII_IntroToNeuroImaging2024.pdf|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Tue''' '''Jan 28''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Structural MRI'''<<BR>> Marta Correia <<BR>> [[attachment:Freesurfer_2025.pdf|Freesurfer]] [[attachment:FSL_VBM_2025.pdf|VBM]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 26''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MRI Physics I''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsI_IntroToNeuroImaging2024.pdf|Slides]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MRI Physics II''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsII_IntroToNeuroImaging2024.pdf|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Tue''' '''Jan 27''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Structural MRI'''<<BR>> Marta Correia <<BR>> [[attachment:Freesurfer_2025.pdf|Freesurfer]] [[attachment:FSL_VBM_2025.pdf|VBM]] ||<45% style="text-align:center;text-align:center"> ||
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||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Feb 3''' ||<45% style="text-align:center;text-align:center">10-12:00:<<BR>> '''PET imaging'''<<BR>> Maura Malpetti <<BR>> ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Introduction to diffusion MRI''' <<BR>> Marta Correia<<BR>> [[attachment:IntroductionToDiffusionMRI_Part1_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part1.pdf|Slides_preprocessing]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 4''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''Advanced Diffusion MRI ''' <<BR>> Marta Correia <<BR>> [[attachment:IntroductionToDiffusionMRI_Part2_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part2.pdf|Slides_TBSS]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Feb 2''' ||<45% style="text-align:center;text-align:center">10-12:00:<<BR>> '''PET imaging'''<<BR>> Maura Malpetti <<BR>> ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Introduction to diffusion MRI''' <<BR>> Marta Correia<<BR>> [[attachment:IntroductionToDiffusionMRI_Part1_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part1.pdf|Slides_preprocessing]] ||
||<style="text-align:center;vertical-align:middle">'''Feb3''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''Advanced Diffusion MRI ''' <<BR>> Marta Correia <<BR>> [[attachment:IntroductionToDiffusionMRI_Part2_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part2.pdf|Slides_TBSS]] ||<45% style="text-align:center;text-align:center"> ||
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||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 17''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI: Introduction, Experimental design & Data ''' <<BR>> Dace Apšvalka <<BR>>[[https://github.com/dcdace/fMRI_training|materials]] <<BR>> ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''fMRI:''' '''Pre-processing & Analysis'''<<BR>> Dace Apšvalka<<BR>> [[https://github.com/dcdace/fMRI_training|materials]]<<BR>> ||
||<style="text-align:center;vertical-align:middle">'''Feb 18''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI:''' '''Practical demo '''<<BR>> Dace Apšvalka<<BR>> [[https://github.com/dcdace/fMRI_training|materials]]<<BR>> ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 16''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI: Introduction, Experimental design & Data ''' <<BR>> Dace Apšvalka <<BR>>[[https://github.com/dcdace/fMRI_training|materials]] <<BR>> ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''fMRI:''' '''Pre-processing & Analysis'''<<BR>> Dace Apšvalka<<BR>> [[https://github.com/dcdace/fMRI_training|materials]]<<BR>> ||
||<style="text-align:center;vertical-align:middle">'''Feb 17''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI:''' '''Practical demo '''<<BR>> Dace Apšvalka<<BR>> [[https://github.com/dcdace/fMRI_training|materials]]<<BR>> ||<45% style="text-align:center;text-align:center"> ||
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||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 24''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''EEG/MEG I – Overview and pre-processing''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG1_5Feb24.pdf|slides]], [[attachment:EEGMEG1.mp4|video]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''EEG/MEG II – Head modelling and source estimation''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG2_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG2_5Feb24.pdf|slides]], [[attachment:EEGMEG2_SourceEstimation.mp4|video]] ||
||<10% style="text-align:center;vertical-align:middle">'''Feb 25''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Online Testing: What's Available and How to Use It Effectively''' <<BR>> Adam Attaheri [[attachment:Attaheri_online_testing_lecture_2025.pdf|PDF]] [[attachment:Adam_25Feb25.zip|materials]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''EEG/MEG III – Time-frequency analysis and functional connectivity''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG3_25Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG3_5Feb24.pdf|slides]], [[attachment:EEGMEG3.mp4|video]] ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 23''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''EEG/MEG I – Overview and pre-processing''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG1_5Feb24.pdf|slides]], [[attachment:EEGMEG1.mp4|video]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''EEG/MEG II – Head modelling and source estimation''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG2_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG2_5Feb24.pdf|slides]], [[attachment:EEGMEG2_SourceEstimation.mp4|video]] ||
||<10% style="text-align:center;vertical-align:middle">'''Feb 24''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Online Testing: What's Available and How to Use It Effectively''' <<BR>> Adam Attaheri [[attachment:Attaheri_online_testing_lecture_2025.pdf|PDF]] [[attachment:Adam_25Feb25.zip|materials]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''EEG/MEG III – Time-frequency analysis and functional connectivity''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG3_25Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG3_5Feb24.pdf|slides]], [[attachment:EEGMEG3.mp4|video]] ||
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||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mar 3''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Functional connectivity in fMRI'''<<BR>>Petar Raykov <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#connectivityfmri|materials]] [[https://www.youtube.com/watch?v=1VOKsWWLgjk|video]] ||<45% style="text-align:center;text-align:center">14-16.00:<<BR>> '''Effective Connectivity''' <<BR>> Rik Henson <<BR>> [[attachment:CBUTraining_Henson_Connectivity.pdf|slides]] ||
||<style="text-align:center;vertical-align:middle">'''Mar 4''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Brain Network Analysis''' <<BR>> Rik Henson <<BR>> [[attachment:CBUTraining_Henson_Networks.pdf|slides]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mar 2''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Functional connectivity in fMRI'''<<BR>>Petar Raykov <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#connectivityfmri|materials]] [[https://www.youtube.com/watch?v=1VOKsWWLgjk|video]] ||<45% style="text-align:center;text-align:center">14-16.00:<<BR>> '''Effective Connectivity''' <<BR>> Rik Henson <<BR>> [[attachment:CBUTraining_Henson_Connectivity.pdf|slides]] ||
||<style="text-align:center;vertical-align:middle">'''Mar 3''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Brain Network Analysis''' <<BR>> Rik Henson <<BR>> [[attachment:CBUTraining_Henson_Networks.pdf|slides]] ||<45% style="text-align:center;text-align:center"> ||
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||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mar 10''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MVPA and RSA''' <<BR>> Daniel Mitchell <<BR>> [[attachment:INM25_MVPA_djm.pptx|Slides]] ||<45% style="text-align:center;text-align:center">14-16.00:<<BR>>'''Brain Stimulation''' <<BR>> Elizabeth Michael <<BR>> previous [[attachment:IntroToTMS_JJ_2022.pdf|slides]] [[attachment:IntroToTMS_JJ_2022.mov|video]] ||
||<style="text-align:center;vertical-align:middle">'''Mar 11''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Neural Network Modelling '''<<BR>> Jascha Achterberg <<BR>> [[https://www.jachterberg.com/cbu_methods|Materials]] ||<45% style="text-align:center;text-align:center"> ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Mar 9''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MVPA and RSA''' <<BR>> Daniel Mitchell <<BR>> [[attachment:INM25_MVPA_djm.pptx|Slides]] ||<45% style="text-align:center;text-align:center">14-16.00:<<BR>>'''Brain Stimulation''' <<BR>> Elizabeth Michael <<BR>> previous [[attachment:IntroToTMS_JJ_2022.pdf|slides]] [[attachment:IntroToTMS_JJ_2022.mov|video]] ||
||<style="text-align:center;vertical-align:middle">'''Mar 10''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Neural Network Modelling '''<<BR>> Jascha Achterberg <<BR>> [[https://www.jachterberg.com/cbu_methods|Materials]] ||<45% style="text-align:center;text-align:center"> ||

Introduction To Neuroimaging Methods

We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation Lent Term 2025. These events will happen in person in the CBU Lecture Theatre on Mondays and Tuesdays and will take 1-2 hours. They are free and open to all researchers from Cambridge.

Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe (a t) mrc-cbu.cam.ac.uk.

The links to slides and other documents below are from previous year's lectures, and may be updated in due course.

Look here for other training opportunities in and around Cambridge.

Please contact OlafHauk with questions and feedback

The below schedule is still from the previous year - please bear with us as we prepare next year's programme.


Mon Jan 19

10-12.00:
Brain Anatomy for Cognitive Neuroscientists
Moataz Assem
PDF

14-16.00:
Introduction to Statistics in Neuroimaging
Rik Henson

Tue Jan 20

10-12.00:
A Field Day - Some Physics You May Find Useful
Olaf Hauk
PDF


Mon Jan 26

10-12.00:
MRI Physics I
Marta Correia
Slides

14-16.00:
MRI Physics II
Marta Correia
Slides

Tue Jan 27

10-12.00:
Structural MRI
Marta Correia
Freesurfer VBM


Feb 2

10-12:00:
PET imaging
Maura Malpetti

14-16.00:
Introduction to diffusion MRI
Marta Correia
Slides_lecture Slides_preprocessing

Feb3

10-12.00:
Advanced Diffusion MRI
Marta Correia
Slides_lecture Slides_TBSS


Term break


Feb 16

10-12:00:
fMRI: Introduction, Experimental design & Data
Dace Apšvalka
materials

14-16:00:
fMRI: Pre-processing & Analysis
Dace Apšvalka
materials

Feb 17

10-12:00:
fMRI: Practical demo
Dace Apšvalka
materials


Feb 23

10-12.00:
EEG/MEG I – Overview and pre-processing
Olaf Hauk
Jupyter notebook, slides, video

14-16.00:
EEG/MEG II – Head modelling and source estimation
Olaf Hauk
Jupyter notebook, slides, video

Feb 24

10-12:00:
Online Testing: What's Available and How to Use It Effectively
Adam Attaheri PDF materials

14-16:00:
EEG/MEG III – Time-frequency analysis and functional connectivity
Olaf Hauk
Jupyter notebook, slides, video


Mar 2

10-12.00:
Functional connectivity in fMRI
Petar Raykov
materials video

14-16.00:
Effective Connectivity
Rik Henson
slides

Mar 3

10-12.00:
Brain Network Analysis
Rik Henson
slides


Mar 9

10-12.00:
MVPA and RSA
Daniel Mitchell
Slides

14-16.00:
Brain Stimulation
Elizabeth Michael
previous slides video

Mar 10

10-12.00:
Neural Network Modelling
Jascha Achterberg
Materials


None: IntroductionNeuroimagingLectures (last edited 2025-10-15 10:40:49 by OlafHauk)