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= Introduction to Neuroimaging Methods =
We are offering two weeks of introductory workshops and lectures on (f)MRI and EEG/MEG analysis as well as brain stimulation in the first two weeks of April 2019. Our workshops are free and open to junior researchers (master's and PhD students and post-doctoral researchers) from Cambridge.		 = Introduction To Neuroimaging Methods =
We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation in January/February 2024. These events will happen in person in the CBU Lecture Theatre on Mondays and Tuesdays and will take 1-2 hours. They are free and open to all researchers from Cambridge.They will happen in the CBU's Lecture Theatre.
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Workshops will take place at the CBU in the West Wing Seminar Room. External attendees please report to reception. Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk . Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk .
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Our workshops are targeted at master’s/PhD students and post-doctoral researchers from the Cambridge cognitive neuroscience community. Our workshops are targeted at master’s/PhD students and post-doctoral researchers from the Cambridge cognitive neuroscience community. Look here for other [[education|training opportunities in and around Cambridge]].
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The workshops are free and open to everyone. However, we have a limited number of spaces. If we reach our limit, priority will be given to students and junior post-doctoral researchers in cognitive neuroscience programmes.

We expect attendees to have basic skills in scientific computing and programming, e.g. at the level taught in our previous workshops. It might help to refresh your memories a little bit.

Look here for other [[education|training opportunities in and around Cambridge]].

For more information, including short descriptions of the workshops with suggestions for introductory reading, please look at the '''[[attachment:NeuroimagingWorkshops_Schedule_April2019.pdf|schedule of our upcoming workshops]]''':		 Please contact OlafHauk with questions and feedback
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<<EmbedObject(NeuroimagingWorkshops_Schedule_April2019.pdf,width=100%,height=600px)>>

Please contact OlafHauk with questions and feedback.

== (f)MRI Physics and DTI ==
||<tablewidth="750px" tableheight="376px" tablestyle="text-align:center; ">Mon, Jan 13 ||Tue, Jan 14 ||Wed, Jan 15 ||Thu, Jan 16 ||Fri, Jan 17 ||
||10-12.00<<BR>> '''Some physics you might find useful'''<<BR>> Olaf Hauk <<BR>>[[attachment:Olaf Some Physics 1Apr19.pdf|PDF]] || || || || ||
||14-16:00 <<BR>>'''MRI Physics I'''<<BR>> Marta Correia <<BR>> ||14-16:00 <<BR>>'''MRI Physics II''' <<BR>> Marta Correia <<BR>> ||14:30-16:00 <<BR>>'''MRI lab tour and demo'''<<BR>> Marta Correia, Marius Mada ||14-16:30 <<BR>>'''Introduction to diffusion MRI'''<<BR>> Marta Correia ||14-16:30 <<BR>>'''Advanced Diffusion MRI''' <<BR>>Marta Correi ||		 ||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Tue''' (!) '''Jan 9''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''A Field Day - Some Physics You May Find Useful''' <<BR>> Olaf Hauk<<BR>>[[attachment:Olaf Some Physics 9Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center"> ||
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== fMRI Analysis ==
||<tablewidth="750px" tableheight="376px" tablestyle="text-align:center; ">Mon, Jan 20 ||Tue, Jan 21 ||Wed, Jan 15 ||Thu, Jan 16 ||Fri, Jan 24 ||
||9:30-12:30 <<BR>>'''fMRI I – Preprocessing'''<<BR>> Johan Carlin <<BR>> || || || || ||
|| ||13-16:00<<BR>> '''fMRI II – GLM and experimental design''' <<BR>>Johan Carlin <<BR>> || || ||13-16:00<<BR>> '''fMRI III – Group analysis and statistical inference'''<<BR>> Johan Carlin <<BR>> ||
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== Multmodal Imaging and Connectivity ==
||<tablewidth="750px" tableheight="376px" tablestyle="text-align:center; ">Mon, Jan 27 ||Tue, Jan 28 ||Wed, Jan 29 ||Thu, Jan 30 ||Fri, Jan 31 ||
|| || || || || ||
|| ||13:30-15:30<<BR>> '''Multimodal Imaging''' <<BR>>Rik Henson ||13:30-15:30<<BR>> '''Brain Connectivity'''<<BR>> Rik Henson || || ||		 <<BR>>
||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Mon''' '''Jan 15''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Brain Anatomy for Cognitive Neuroscientists'''<<BR>> Moataz Assem [[attachment:Assem_anatomy_lecture_15Jan24.pdf|PDF]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MRI Physics I''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsI_IntroToNeuroImaging2024.pdf|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Tue''' '''Jan 16''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''MRI Physics II''' <<BR>> Marta Correia<<BR>> [[attachment:MRPhysicsII_IntroToNeuroImaging2024.pdf|Slides]] ||<45% style="text-align:center;text-align:center"> ||
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== EEG/MEG Analysis ==
||<tablewidth="750px" tableheight="376px" tablestyle="text-align:center; ">Mon, Feb 3 ||Tue, Feb 4 ||Wed, Feb 5 ||Thu, Feb 6 ||Fri, Feb 7 ||
|| ||10-12:30 <<BR>>'''EEG/MEG I – Pre-processing'''<<BR>> Olaf Hauk<<BR>> [[attachment:Olaf EEGMEG1 2Apr19.pdf|PDF]] [[attachment:EEGMEG1_notebook.ipynb|IPYNB]] ||10-12:30<<BR>> '''EEG/MEG III – Time-frequency and functional connectivity'''<<BR>> Olaf Hauk <<BR>>[[attachment:Olaf EEGMEG3 3Apr19.pdf|PDF]] [[attachment:EEGMEG3.ipynb|IPYNB]] || || ||
|| ||14-16:30 <<BR>>'''EEG/MEG II – Source Estimation'''<<BR>> Olaf Hauk<<BR>> [[attachment:Olaf EEGMEG2 2Apr19.pdf|PDF]] [[attachment:EEGMEG2.ipynb|IPYNB]] || || || ||

<<BR>>
||<tablewidth="100%" tablestyle="text-align:center"style="text-align:center;vertical-align:middle">'''Jan 22''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''Introduction to diffusion MRI''' <<BR>> Marta Correia<<BR>> [[attachment:IntroductionToDiffusionMRI_Part1_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part1.pdf|Slides_preprocessing]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''Advanced Diffusion MRI ''' <<BR>> Marta Correia <<BR>> [[attachment:IntroductionToDiffusionMRI_Part2_2024.pdf|Slides_lecture]] [[attachment:FSL_DTI&TBSS_Part2.pdf|Slides_TBSS]] ||
||<style="text-align:center;vertical-align:middle">'''Jan 23''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI: Introduction, Experimental design & Data ''' <<BR>> Dace Apšvalka <<BR>> [[https://github.com/dcdace/fMRI_training/|materials]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Jan 29 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''fMRI:''' '''Pre-processing & Analysis'''<<BR>> Dace Apšvalka<<BR>>[[https://github.com/dcdace/fMRI_training/|materials]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''fMRI:''' '''Practical demo '''<<BR>> Dace Apšvalka<<BR>>[[https://github.com/dcdace/fMRI_training/|materials]] ||
||<style="text-align:center;vertical-align:middle">'''Jan 30 ''' ||<45% style="text-align:center;text-align:center">10-12:00:<<BR>> '''PET imaging'''<<BR>> Maura Malpetti <<BR>> ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 5''' ||<45% style="text-align:center;text-align:center">10-12.00: <<BR>> '''EEG/MEG I – Overview and pre-processing''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG1_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG1_5Feb24.pdf|slides]], [[attachment:EEGMEG1.mp4|video]] ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''EEG/MEG II – Head modelling and source estimation''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG2_24Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG2_5Feb24.pdf|slides]], [[attachment:EEGMEG2_SourceEstimation.mp4|video]] ||
||<10% style="text-align:center;vertical-align:middle">'''Feb 6''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''EEG/MEG III – Time-frequency analysis and functional connectivity''' <<BR>> Olaf Hauk <<BR>>[[attachment:EEGMEG3_25Jan22.ipynb|Jupyter notebook]], [[attachment:Olaf EEGMEG3_5Feb24.pdf|slides]], [[attachment:EEGMEG3.mp4|video]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 12 ''' ||<45% style="text-align:center;text-align:center">10-12.00:I<<BR>>'''Functional connectivity in fMRI'''<<BR>>Petar Raykov <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#connectivityfmri|materials]] [[https://www.youtube.com/watch?v=1VOKsWWLgjk|video]] ||<45% style="text-align:center;text-align:center">14-16:00: <<BR>> '''Effective Connectivity for fMRI (DCM)''' <<BR>> Rik Henson & Pranay Yadav<<BR>>[[attachment:CBU-Neuroimaging-Training-DCM-fMRI-demo-slides.pdf|DCM fMRI demo slides]], [[attachment:CBU-Neuroimaging-Training-DCM-PEB-demo-slides.pdf|DCM PEB demo slides]], [[https://youtu.be/1VOKsWWLgjk|video]], [[attachment:CBU-Neuroimaging-Training-DCM-fMRI.pdf|document]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 13 ''' ||<45% style="text-align:center;text-align:center">10-12:00: <<BR>> '''Effective Connectivity for MEG/EEG (DCM)''' <<BR>> Pranay Yadav & Rik Henson <<BR>> [[attachment:CBU-Neuroimaging-Training-DCM-MEEG-demo-slides.pdf|DCM MEEG demo slides]], [[attachment:CBU-Neuroimaging-Training-DCM-PEB-demo-slides.pdf|DCM PEB demo slides]], [[https://www.youtube.com/watch?v=HNaAvKmVCYo|video]], [[attachment:CBU-Neuroimaging-Training-DCM-MEEG.pdf|document]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 19''' ||<45% style="text-align:center;text-align:center">10.12.00:<<BR>> '''Graph Theory''' <<BR>> Isaac Sebenius<<BR>> [[attachment:COGNESTIC23-presentation_Sebenius.pdf|slides]]<<BR>> ||<45% style="text-align:center;text-align:center">14-16.00: <<BR>> '''MVPA and RSA''' <<BR>> Daniel Mitchell <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2022#rsa1|materials for The Decoding Toolbox]] <<BR>> [[https://imaging.mrc-cbu.cam.ac.uk/methods/COGNESTIC2023#rsa2|materials for the RSA Toolbox]] [[attachment:INM24_MVPA_djm.pptx|Slides]] ||
||<style="text-align:center;vertical-align:middle">'''Feb 20''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>>'''Brain Stimulation''' <<BR>> Elizabeth Michael <<BR>> previous [[attachment:IntroToTMS_JJ_2022.pdf|slides]] [[attachment:IntroToTMS_JJ_2022.mov|video]] ||<45% style="text-align:center;text-align:center"> ||




<<BR>>
||<tablewidth="100%"style="text-align:center;vertical-align:middle">'''Feb 26''' ||<45% style="text-align:center;text-align:center">10-12.00:<<BR>> '''Neural Network Modelling '''<<BR>> Jascha Achterberg <<BR>> ||<45% style="text-align:center;text-align:center"> ||




----

Introduction To Neuroimaging Methods

We are offering introductory lectures on neuroimaging data analysis as well as brain stimulation in January/February 2024. These events will happen in person in the CBU Lecture Theatre on Mondays and Tuesdays and will take 1-2 hours. They are free and open to all researchers from Cambridge.They will happen in the CBU's Lecture Theatre.

Details will be announced before individual events via our skillstraining mailing list. To subscribe, please send an e-mail to skillstraining-subscribe@mrc-cbu.cam.ac.uk .

Our workshops are targeted at master’s/PhD students and post-doctoral researchers from the Cambridge cognitive neuroscience community. Look here for other training opportunities in and around Cambridge.

Please contact OlafHauk with questions and feedback


Tue (!) Jan 9

10-12.00:
A Field Day - Some Physics You May Find Useful
Olaf Hauk
PDF


Mon Jan 15

10-12.00:
Brain Anatomy for Cognitive Neuroscientists
Moataz Assem PDF

14-16.00:
MRI Physics I
Marta Correia
Slides

Tue Jan 16

10-12.00:
MRI Physics II
Marta Correia
Slides


Jan 22

10-12.00:
Introduction to diffusion MRI
Marta Correia
Slides_lecture Slides_preprocessing

14-16.00:
Advanced Diffusion MRI
Marta Correia
Slides_lecture Slides_TBSS

Jan 23

10-12:00:
fMRI: Introduction, Experimental design & Data
Dace Apšvalka
materials


Jan 29

10-12:00:
fMRI: Pre-processing & Analysis
Dace Apšvalka
materials

14-16:00:
fMRI: Practical demo
Dace Apšvalka
materials

Jan 30

10-12:00:
PET imaging
Maura Malpetti


Feb 5

10-12.00:
EEG/MEG I – Overview and pre-processing
Olaf Hauk
Jupyter notebook, slides, video

14-16.00:
EEG/MEG II – Head modelling and source estimation
Olaf Hauk
Jupyter notebook, slides, video

Feb 6

10-12:00:
EEG/MEG III – Time-frequency analysis and functional connectivity
Olaf Hauk
Jupyter notebook, slides, video


Feb 12

10-12.00:I
Functional connectivity in fMRI
Petar Raykov
materials video

14-16:00:
Effective Connectivity for fMRI (DCM)
Rik Henson & Pranay Yadav
DCM fMRI demo slides, DCM PEB demo slides, video, document

Feb 13

10-12:00:
Effective Connectivity for MEG/EEG (DCM)
Pranay Yadav & Rik Henson
DCM MEEG demo slides, DCM PEB demo slides, video, document


Feb 19

10.12.00:
Graph Theory
Isaac Sebenius
slides

14-16.00:
MVPA and RSA
Daniel Mitchell
materials for The Decoding Toolbox
materials for the RSA Toolbox Slides

Feb 20

10-12.00:
Brain Stimulation
Elizabeth Michael
previous slides video


Feb 26

10-12.00:
Neural Network Modelling
Jascha Achterberg

None: IntroductionNeuroimagingLectures (last edited 2024-02-19 09:44:51 by OlafHauk)