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Course Material for COGNESTIC 2022

The Cognitive Neuroscience Skills Training In Cambridge (COGNESTIC) is a 2-week course that provides researchers with training in state-of-the-art methods for neuroimaging and neurostimulation. You can find more information on the COGNESTIC webpage.

Below you will find documents, videos and web links that will be used for the course or can be used for preparation.

Introduction and Open Science
Rik Henson & Olaf Hauk

Software

N/A

Datasets

N/A

Suggested reading

Poldrack et al, NRN

Suggested viewing

N/A


Structural MRI
Marta Correia

Software

Datasets

Suggested reading

Suggested viewing


Diffusion MRI I
Marta Correia

Software

Datasets

Suggested reading

Suggested viewing


Diffusion MRI II
Marta Correia

Software

Datasets

Suggested reading

Suggested viewing


fMRI I
Dace Apšvalka

Software

Datasets

Suggested reading

Suggested viewing


fMRI II
Dace Apšvalka

Software

Datasets

Suggested reading

Suggested viewing


fMRI III
Dace Apšvalka

Software

Datasets

Suggested reading

Suggested viewing


fMRI IV
Dace Apšvalka

Software

Datasets

Suggested reading

Suggested viewing


Connectivity for fMRI
Rik Henson

Software

SPM12

Datasets

Wakeman Multimodal

Suggested reading

fMRI preprocessing in SPM12
Simple Intro to DCM

Suggested viewing

Functional Connectivity (first part on fMRI)


Eye-tracking
Edwin Dalmijer

Software

Datasets

Suggested reading

Suggested viewing


EEG/MEG I – Pre-processing
Olaf Hauk

Software

MNE-Pythonneuro

Datasets

Sample dataset in MNE-Python. Tutorials

Suggested reading

Digitial Filtering
Filtering How To
Maxwell Filtering

Suggested viewing

Preprocessing
What are we measuring with M/EEG?


EEG/MEG II – Source Estimation
Olaf Hauk

Software

MNE-Python

Datasets

Sample dataset in MNE-Python. Tutorials

Suggested reading

Linear source estimation and spatial resolution

Suggested viewing

M/EEG Source Analysis in SPM


EEG/MEG III – Time-Frequency and Functional Connectivity
Olaf Hauk

Software

MNE-Python

Datasets

Sample dataset in MNE-Python. Tutorials

Suggested reading

Tutorial on Functional Connectivity
Analyzing Neural Time Series Data

Suggested viewing

Time-frequency and functional connectivity analysis
Time-Frequency Analysis of EEG Time Series


Graph Theory
Caroline Nettekoven

Software

Brain Connectivity Toolbox in Matlab

Datasets

Coding exercises
Exercise solutions

Suggested reading

Complex brain networks: graph theoretical analysis of structural and functional systems

Suggested viewing

Slides


MVPA/RSA I
Daniel Mitchell

Software

Datasets

Suggested reading

Suggested viewing


MVPA/RSA II
Daniel Mitchell

Software

Datasets

Suggested reading

Suggested viewing


Statistics in R
Peter Watson

Software

R

Datasets

Data&Code Readme

Suggested reading

Statistical Methods for Psychology (Howell)
Introduction to R

Suggested viewing

CBU Statistics Lectures


Brain Stimulation
Ajay Halai

Software

Datasets

Suggested reading

Suggested viewing


DCM for M/EEG
Rik Henson

Software

SPM12

Datasets

Wakeman Multimodal

||Suggested reading || Preprocessing M/EEG in SPM12
Simple Intro to DCM ||

Suggested viewing

To-be-updated: Second part on functional Connectivity M/EEG

None: COGNESTIC2022 (last edited 2023-03-31 12:36:10 by OlafHauk)