ReadingDataInMatlab - Meg Wiki

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Opening fif-files in Matlab

This is done using the FiffAccess toolbox. The toolbox and the manual can be downloaded from here:

The commands are already installed on the CBU network on the path: /neuro/mce/meg_1.2/

Since l21 (a Red Hat Enterprise 4 machine) is the only machine that currently contains the software, you will probably need to ssh to l21 before launching your Matlab session.

BRSome particularly useful commands include: BR BR• To get information about all the channels in a fif-file: [NAME, TYPE, NUMBER, COILTYPE, TRANSFORM] = CHANNAMES (FILENAME)


BR• To load continuous data from specified channels: [DATA, SAMPFREQ, T0] = RAWCHANNELS (FILENAME, CHANNELNAMES, TIMERANGE)

BRFor more information on any command, type: help <command> at the Matlab prompt.BR

BRTo load raw data, there is one extra initial step required. The FiffAccess toolbox does not (yet) understand data in the 32-bit integer format that our MEG machine produces, but only supports 16-bit integers and 32-bit floating point numbers. Fortunately, you can convert your data into floating point format using the MaxFilter program (you do not need to actually filter the data if you don't want to). The command:

  • /neuro/bin/util/maxfilter -f infile.fif -nosss -format float

should do it (and if you leave out the -nosss it of course filters the data as well). You can achieve the same result using the MaxFilter GUI.

BRSome examples of scripts which use these commands to save evoked responses and continuous channel data to .mat files, and then plot summary graphs of the evoked time-courses and signal variance per channel can be found here soon.

-- DannyMitchell DateTime(2007-03-09T11:22:36Z)