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| This is done using the !FiffAccess toolbox. The toolbox and the manual can be downloaded from here: http://www.kolumbus.fi/~w132276/programs/meg-pd. | This can be done using the !FiffAccess toolbox. The toolbox and the manual can be downloaded from here: http://www.kolumbus.fi/~w132276/programs/meg-pd. |
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| The commands are already installed on the CBU network on the path: `/neuro/mce/meg_1.2/` | The functions are installed on the CBU network on the path: `/neuro/mce/meg_1.2/` |
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| Since l21 (a Red Hat Enterprise 4 machine) is the only machine that currently contains the software, you will probably need to ssh to l21 before launching your Matlab session. | <<BR>>Some particularly useful commands include: <<BR>> <<BR>>• To get information about all the channels in a fif-file: `[NAME, TYPE, NUMBER, COILTYPE, TRANSFORM] = CHANNAMES (FILENAME)` |
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| [[BR]]Some particularly useful commands include: [[BR]] [[BR]]• To get information about all the channels in a fif-file: `[NAME, TYPE, NUMBER, COILTYPE, TRANSFORM] = CHANNAMES (FILENAME)` |
<<BR>>• To load evoked responses: <<BR>>`[NSETS, COMMENTS] = LOADFIF (FILENAME, ‘sets’)` `[[BR]][DATA, SAMPFREQ, T0] = LOADFIF (FILENAME, SET)` |
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| [[BR]]• To load an evoked response: [[BR]]`[NSETS, COMMENTS] = LOADFIF (FILENAME, ‘sets’)` `[DATA, SAMPFREQ, T0] = LOADFIF (FILENAME, SET)` |
<<BR>>• To load continuous data from specified channels: `[DATA, SAMPFREQ, T0] = RAWCHANNELS (FILENAME, CHANNELNAMES, TIMERANGE)` |
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| [[BR]]• To load continuous data from specified channels: `[DATA, SAMPFREQ, T0] = RAWCHANNELS (FILENAME, CHANNELNAMES, TIMERANGE)` |
<<BR>>For more information on any command, type: `help <command>` at the Matlab prompt.<<BR>> |
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| [[BR]]For more information on any command, type: `help <command>` at the Matlab prompt.[[BR]] [[BR]]To load raw data, there is one extra initial step required. The !FiffAccess toolbox does not (yet) understand data in the 32-bit integer format that our MEG machine produces, but only supports 16-bit integers and 32-bit floating point numbers. Fortunately, you can convert your data into floating point format using the !MaxFilter program (you do not need to actually filter the data if you don't want to). The command: |
<<BR>>To load raw data, there is one extra initial step required. The !FiffAccess toolbox does not (yet) understand data in the 32-bit integer format that our MEG machine produces, but only supports 16-bit integers and 32-bit floating point numbers. Fortunately, you can convert your data into floating point format using the !MaxFilter program (you do not need to actually filter the data if you don't want to). The command: |
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| [[BR]]Some examples of scripts which use these commands to save evoked responses and continuous channel data to .mat files, and then plot summary graphs of the evoked time-courses and signal variance per channel can be found here soon. | <<BR>>Some examples of scripts which use these commands to save evoked responses and continuous data to .mat files, and then plot summary graphs of the evoked time-courses and signal variance per channel can be found [[attachment:ExampleScriptsUsingFiffAccess.zip|here]]. |
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| -- CbuBaseWiki:DannyMitchell [[DateTime(2007-03-09T11:22:36Z)]] [[BR]]DannyMitchell 09/03/07 |
-- CbuBaseWiki:DannyMitchell <<DateTime(2007-03-09T11:22:36Z)>> |
Opening fif-files in Matlab
This can be done using the FiffAccess toolbox. The toolbox and the manual can be downloaded from here: http://www.kolumbus.fi/~w132276/programs/meg-pd.
The functions are installed on the CBU network on the path: /neuro/mce/meg_1.2/
Some particularly useful commands include:
• To get information about all the channels in a fif-file: [NAME, TYPE, NUMBER, COILTYPE, TRANSFORM] = CHANNAMES (FILENAME)
• To load evoked responses:
[NSETS, COMMENTS] = LOADFIF (FILENAME, ‘sets’) [[BR]][DATA, SAMPFREQ, T0] = LOADFIF (FILENAME, SET)
• To load continuous data from specified channels: [DATA, SAMPFREQ, T0] = RAWCHANNELS (FILENAME, CHANNELNAMES, TIMERANGE)
For more information on any command, type: help <command> at the Matlab prompt.
To load raw data, there is one extra initial step required. The FiffAccess toolbox does not (yet) understand data in the 32-bit integer format that our MEG machine produces, but only supports 16-bit integers and 32-bit floating point numbers. Fortunately, you can convert your data into floating point format using the MaxFilter program (you do not need to actually filter the data if you don't want to). The command:
/neuro/bin/util/maxfilter -f infile.fif -nosss -format float
should do it (and if you leave out the -nosss it of course filters the data as well). You can achieve the same result using the MaxFilter GUI.
Some examples of scripts which use these commands to save evoked responses and continuous data to .mat files, and then plot summary graphs of the evoked time-courses and signal variance per channel can be found here.
-- DannyMitchell 2007-03-09 11:22:36