<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>BasicMeegPipelineSpm5</title><revhistory><revision><revnumber>8</revnumber><date>2013-03-08 10:02:45</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>7</revnumber><date>2009-07-13 11:15:55</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>6</revnumber><date>2009-01-27 13:11:32</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>5</revnumber><date>2009-01-27 12:29:01</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>4</revnumber><date>2009-01-27 12:28:46</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>3</revnumber><date>2009-01-27 12:28:40</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>2</revnumber><date>2009-01-27 12:28:22</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>1</revnumber><date>2009-01-27 12:27:53</date><authorinitials>RikHenson</authorinitials></revision></revhistory></articleinfo><section><title>Outline analysis pipeline for Neuromag MEG/EEG data in SPM</title><orderedlist numeration="arabic"><listitem><para>Use Neuromag's Maxfilter  (including Trans Default for Sensor-Level analyses) </para></listitem><listitem><para>Write magnetometers, gradiometers and EEG to separate files for parallel preprocessing </para></listitem><listitem><para>Call EEGLAB from SPM to project out ICA components that correlate with measured EOG/ECG </para></listitem><listitem><para>Usual filtering, epoching, thresholding, averaging… </para></listitem><listitem><para>Write out 2D sensor x 1D time images for each trial or subject, and localise reliable voxel-wise effects in 3D space-time across trials/subjects using Random Field Theory for multiple comparisons </para></listitem><listitem><para>Automatically normalise and segment MRI, and create meshes for cortex, skull and scalp (“canonical” cortical mesh is an inverse-normalised template mesh, Mattout et al, 2007) </para></listitem><listitem><para>Create forward models by calling Brainstorm (concentric spheres, overlapping-spheres, BEMs) </para></listitem><listitem><para>Invert forward models using Multiple Sparse Priors (Friston et al, 2008), an important new approach that uses ~750 local cortical patches as source priors… </para><para>… including ability to optimise source priors by pooling over subjects (Litvak &amp; Friston, 2008)… and (in near future) the ability to add multiple fMRI-cluster source priors (Henson et al, submitted) </para></listitem><listitem><para>Then simultaneously re-invert (fuse) forward models for each sensor-type, which automatically weights each sensor-type (magnetometers, gradiometers, EEG) in a principled fashion (Henson et al, 2009b) </para></listitem><listitem><para>(Compare different models using the Bayesian model evidence, eg Henson et al, 2009a) </para></listitem><listitem><para>Evaluate a time-frequency contrast of source energy (which can include induced energy, Friston et al, 2006) </para></listitem><listitem><para>Write a 3D image in template (MNI) space for that contrast, and perform usual SPM voxel-wise analysis across trials/subejcts to localise effects in the brain </para></listitem><listitem><para>(A similar pathway can also be used for time-frequency analysis using wavelets) </para></listitem><listitem><para>A further possibility is to assume a number of ECDs (eg seeded by distributed inversion above), and use Dynamic Causal Modelling (DCM) to make inferences about changes in effective connectivity …[more will follow on DCM] </para></listitem></orderedlist></section></article>