AnalyzingData/check_autorecon1 - Meg Wiki

Revision 7 as of 2010-06-09 13:12:06

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location: AnalyzingData / check_autorecon1

Checking Talairach transform after autorecon1

Use the command

: tkregister2 --mgz --s <mysubjectname> -fstal

to compare your MRI with a Talairach template. You will see something like this:


Switch between "TARGET" and "MOVEABLE" (bottom middle of display) to switch between the two views. You can use the scaling, translation and rotation functions to improve the match between your MRI and the template. However, very few (if any) images will need editing at this stage. If you do change something, use "SAVE REG" (top left) to save the result. You will then have to run the previous autorecon1 step again.