AnalyzingData/MNE_CovarianceMatrix - Meg Wiki

Revision 1 as of 2010-06-09 16:27:20

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location: AnalyzingData / MNE_CovarianceMatrix

#

path='<myrawMEGdatapath>' # where your raw MEG fiff-files are

# MEG IDs (your directory structure may differ) subj_pre=(\

  • 'meg10_0001' \ 'meg10_0002' \ 'meg10_0003' \ )

# MEG subdirectories (your directory structure may differ) subj_dir=(\

  • '100001' \ '100002' \ '100003' \
  • )

nsubjects=${#subjects[*]} lastsubj=expr $nsubjects - 1

for m in seq 0 ${lastsubj} do

  • echo " " echo " Computing covariance matrix for SUBJECT ${subjects[m]}" echo " " mne_process_raw \
    • --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}B_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}B_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}B_raw_ssstf_raw.fif \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}B_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}B_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}B_raw_ssstf_raw.txt \ --projoff \ --cov GNG.cov \ --savecovtag -cov \ --gcov ${path}/${subj_pre[m]}/${subj_dir[m]}/covmat-cov.fif

done # subject loop

echo " " echo "DONE" echo " "

# END OF SCRIPT

#--events ${eventpath}/${subjects[m]}_block2_use.eve