#
path='<myrawMEGdatapath>' # where your raw MEG fiff-files are
# MEG IDs (your directory structure may differ) subj_pre=(\
- 'meg10_0001' \ 'meg10_0002' \ 'meg10_0003' \ )
# MEG subdirectories (your directory structure may differ) subj_dir=(\
- '100001' \ '100002' \ '100003' \
- )
nsubjects=${#subjects[*]} lastsubj=expr $nsubjects - 1
for m in seq 0 ${lastsubj} do
- echo " " echo " Computing covariance matrix for SUBJECT ${subjects[m]}" echo " " mne_process_raw \
- --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}B_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}B_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}A_raw_ssstf_raw.fif \ --raw ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}B_raw_ssstf_raw.fif \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/lex_${subjects[m]}B_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/sem_${subjects[m]}B_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}A_raw_ssstf_raw.txt \ --eventsout ${path}/${subj_pre[m]}/${subj_dir[m]}/freq_${subjects[m]}B_raw_ssstf_raw.txt \ --projoff \ --cov GNG.cov \ --savecovtag -cov \ --gcov ${path}/${subj_pre[m]}/${subj_dir[m]}/covmat-cov.fif
done # subject loop
echo " " echo "DONE" echo " "
# END OF SCRIPT
#--events ${eventpath}/${subjects[m]}_block2_use.eve