#
path='<myMEGdatapath>' # where your MEG fiff-files are MRIpath='/myMRIdirectory/' # where your MRI subdirectories are outpath='/myoutpath' # path for output files
#condition names as used in file names to which inverse operator shall be applied conds=('cond1' 'cond2' 'cond3')
# subjects names used for MRI data subjects=(\
- 'Subject1' \ 'Subject1' \ 'Subject1' \
)
# MEG IDs (your directory structure may differ) subj_pre=(\
- 'meg10_0001' \ 'meg10_0002' \ 'meg10_0003' \ )
# MEG subdirectories (your directory structure may differ) subj_dir=(\
- '100001' \ '100002' \ '100003' \
- )
# SCRIPT BEGINS HERE:
nsubjects=${#subjects[*]} lastsubj=expr $nsubjects - 1
nconds=${#conds[*]} lastcond=expr $nconds - 1
for m in seq 0 ${lastsubj} do
- echo " " echo " Computing movies for SUBJECT ${subjects[m]}" echo " "
for c in seq 0 ${lastcond} do
- # Current Estimates mne_make_movie \ --subject {subjects[m]} \
--inv --inv ${path}/${subj_pre[m]}_0${subjects[m]}/${subj_dir[m]}/YourName_1L-MEG-loose0.2-inv.fif \ --meas ${path}/${subj_pre[m]}/${subj_dir[m]}/${conds[c]}.fif \ --morph average \ --smooth 5 \ --bmin -100 \ --bmax 0 \ --stc ${outpath}/STC/${subj_pre[m]}_${conds[c]}
- # Current Estimates mne_make_movie \ --subject {subjects[m]} \
done # subjects