= Overview of MNE Processing Steps and Commands =
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:'''

 * mri_convert
 * recon-all
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:'''

 * mne_watershed_bem
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:'''

 * mne_setup_mri
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:'''

 * mne_setup_source_space
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:'''

 * mne_analyze
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:'''

 * mne_setup_forward_model
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:'''

 * mne_do_forward_solution
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:'''

 * mne_process_raw
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:'''

 * make_average_subject
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:'''

 * mne_do_inverse_operator
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:'''

 * mne_make_movie
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:'''

 * mne_average_estimates
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:'''

 * mne_make_movie