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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:'''

 * mri_convert
 * recon-all
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mne_watershed_bem  * mne_watershed_bem
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mne_setup_mri  * mne_setup_mri
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mne_setup_source_space  * mne_setup_source_space
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mne_analyze  * mne_analyze
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mne_setup_forward_model  * mne_setup_forward_model
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mne_do_forward_solution  * mne_do_forward_solution
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mne_process_raw  * mne_process_raw
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make_average_subject  * make_average_subject
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mne_do_inverse_operator  * mne_do_inverse_operator
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mne_make_movie  * mne_make_movie
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mne_average_estimates  * mne_average_estimates
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mne_make_movie  * mne_make_movie

Overview of MNE Processing Steps and Commands

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:

  • mri_convert
  • recon-all

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:

  • mne_watershed_bem

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:

  • mne_setup_mri

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:

  • mne_setup_source_space

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:

  • mne_analyze

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:

  • mne_setup_forward_model

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:

  • mne_do_forward_solution

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:

  • mne_process_raw

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:

  • make_average_subject

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:

  • mne_do_inverse_operator

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:

  • mne_make_movie

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:

  • mne_average_estimates

[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:

  • mne_make_movie

CbuMeg: AnalyzingData/MNE_AllInOne (last edited 2013-03-08 10:02:29 by localhost)