Rob installed Matlab R2006b (7.3) R2008b and R2009a I think this should be enough version wise hopefully.
Machines details are as follows
L43 / L44 = CentOS 5.3 x86-64 L45/ L46 = CentOS 5.3 i386
All systems have a 80GB /scratch partition to testing using local disc during the analyses.
EEG Lab
Tested by Jason Taylor - works fine on 32 & 64 bit machines
FSL
Tested by Martin Monti
CentOs 5 32bit (FSL4.1.4) 2221.62user 51.34system 45:29.18elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (41major+16526197minor)pagefaults 0swaps
CentOs 5 64 Bit (FSL4.1.4) 1815.98user 37.20system 32:30.90elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (5major+14040943minor)pagefaults 0swaps
Additional testing by Jonathan Peelle
FSL test suite. 32-bit FSL on l46(i386): 37m16.659s 32-bit FSL on l44(x86-64): 37m23.956s 64-bit FSL on l44(x86-64): 29m38.987s
MNE/Freesurfer
Tested by Dan Wakeman
They seem to be missing some key libraries (or possibly improperly installed) e.g. lapack for lots of software. Will play with 3d stuff once this is sorted.
SPM MEG
Tested by Jason Taylor/ Daniel Mitchell .mex64 required recompile (got spurious "out of memory" error in filearray access) but then appears to work fine
SPM FMRI
aa version 3 test script, all stages up to and including smoothing Runs fine on 32 & 64 bit machines
BENCHMARK TIMINGS IN SECONDS 04-Aug-2009 10:34:30 MACHINE l43
0.034743 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_converttmaps |
77.955775 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_copystructural |
102.068164 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_convert_epis |
124.188648 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_convert_epis |
854.017165 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_realign |
13.004268 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_tsdiffana |
12.437592 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_tsdiffana |
122.092428 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_slicetiming |
132.987688 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_slicetiming |
25.242228 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_coreg_noss |
516.907568 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_norm_noss |
211.949091 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_norm_write |
255.698338 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_norm_write |
248.993594 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_smooth |
295.791207 |
taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_smooth |
STAGES NOT COMPLETED: 0 TOTAL TIME SO FAR: 2993.368497
BENCHMARK TIMINGS IN SECONDS 04-Aug-2009 09:17:44 MACHINE l45
0.054619 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_converttmaps |
79.689526 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_copystructural |
528.510791 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_convert_epis |
478.110204 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_convert_epis |
2415.385071 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_realign |
128.452764 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_tsdiffana |
14.462088 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_tsdiffana |
139.64137 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_slicetiming |
142.661687 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_slicetiming |
40.816936 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_coreg_noss |
871.872395 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_norm_noss |
646.672488 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_norm_write |
875.077629 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_norm_write |
1004.43418 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_smooth |
481.288004 |
taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_smooth |
STAGES NOT COMPLETED: 0 TOTAL TIME SO FAR: 7847.129752
Software maintainers copied from AvailableSoftware
Software |
||||
Package |
First port of Call (i.e. wiki page) |
Manager |
Maintainer |
Contributors |
EEG Lab |
|
Jason Taylor |
Jason Taylor |
Jason Taylor |
Fieldtrip |
Jonathan Peelle |
Jonathan Peelle |
|
|
Freesurfer |
|
Daniel Wakeman |
Daniel Wakeman |
Daniel Wakeman |
FSL |
FSL-FEEDS http://www.fmrib.ox.ac.uk/fsl/feeds/doc/index.html |
Martin Monti |
Martin Monti |
Martin Monti |
MNE |
Daniel Wakeman |
Daniel Wakeman |
Daniel Wakeman |
|
SPM |
<style="vertical-align: top;">http://imaging.mrc-cbu.cam.ac.uk/imaging/SpmInformation (FMRI) http://imaging.mrc-cbu.cam.ac.uk/meg/SpmAnalysis (MEG/EEG) |
Rhodri Cusack |
Rhodri Cusack |
Daniel Mitchell, Jason Taylor, Rik Henson, Rhodri Cusack |