TestsNewConfigJuly2009152013-03-07 21:22:56localhostconverted to 1.6 markup142009-11-09 14:47:52MartinMonti132009-11-09 14:45:46MartinMontiRevert to revision 11.122009-11-09 14:33:24MartinMonti112009-08-04 09:40:39RhodriCusack102009-08-04 09:39:42RhodriCusack92009-08-04 09:38:01RhodriCusack82009-08-04 08:33:34RhodriCusack72009-08-04 08:33:06RhodriCusack62009-08-04 08:32:46RhodriCusack52009-08-04 08:32:13RhodriCusack42009-08-04 08:31:44RhodriCusack32009-08-04 08:28:29RhodriCusack22009-08-04 08:26:59RhodriCusack12009-08-04 08:24:33RhodriCusackConfigurationRob installed Matlab R2006b (7.3) R2008b and R2009a I think this should be enough version wise hopefully. Machines details are as follows L43 / L44 = CentOS 5.3 x86-64 L45/ L46 = CentOS 5.3 i386 All systems have a 80GB /scratch partition to testing using local disc during the analyses. EEG LabTested by Jason Taylor - works fine on 32 & 64 bit machines FSLTested by Martin Monti CentOs 5 32bit (FSL4.1.4) 2221.62user 51.34system 45:29.18elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (41major+16526197minor)pagefaults 0swaps CentOs 5 64 Bit (FSL4.1.4) 1815.98user 37.20system 32:30.90elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (5major+14040943minor)pagefaults 0swaps Additional testing by Jonathan Peelle FSL test suite. 32-bit FSL on l46(i386): 37m16.659s 32-bit FSL on l44(x86-64): 37m23.956s 64-bit FSL on l44(x86-64): 29m38.987s MNE/FreesurferTested by Dan Wakeman They seem to be missing some key libraries (or possibly improperly installed) e.g. lapack for lots of software. Will play with 3d stuff once this is sorted. SPM MEGTested by Jason Taylor/ Daniel Mitchell .mex64 required recompile (got spurious "out of memory" error in filearray access) but then appears to work fine SPM FMRIaa version 3 test script, all stages up to and including smoothing Runs fine on 32 & 64 bit machines BENCHMARK TIMINGS IN SECONDS 04-Aug-2009 10:34:30 MACHINE l43 0.034743 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_converttmaps
77.955775 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_copystructural
102.068164 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_convert_epis
124.188648 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_convert_epis
854.017165 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_realign
13.004268 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_tsdiffana
12.437592 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_tsdiffana
122.092428 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_slicetiming
132.987688 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_slicetiming
25.242228 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_coreg_noss
516.907568 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/done_aamod_norm_noss
211.949091 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_norm_write
255.698338 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_norm_write
248.993594 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/vstm/done_aamod_smooth
295.791207 taken to complete stage /imaging/rhodri/aa_demo_l43/testdata/CBU090300/esta/done_aamod_smooth
STAGES NOT COMPLETED: 0 TOTAL TIME SO FAR: 2993.368497 BENCHMARK TIMINGS IN SECONDS 04-Aug-2009 09:17:44 MACHINE l45 0.054619 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_converttmaps
79.689526 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_copystructural
528.510791 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_convert_epis
478.110204 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_convert_epis
2415.385071 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_realign
128.452764 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_tsdiffana
14.462088 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_tsdiffana
139.64137 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_slicetiming
142.661687 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_slicetiming
40.816936 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_coreg_noss
871.872395 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/done_aamod_norm_noss
646.672488 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_norm_write
875.077629 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_norm_write
1004.43418 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/vstm/done_aamod_smooth
481.288004 taken to complete stage /imaging/rhodri/aa_demo_l45/testdata/CBU090300/esta/done_aamod_smooth
STAGES NOT COMPLETED: 0 TOTAL TIME SO FAR: 7847.129752 Software maintainers copied from AvailableSoftwareSoftware
Package First port of Call (i.e. wiki page) Manager Maintainer Contributors
EEG Lab Jason Taylor Jason Taylor Jason Taylor
Fieldtrip FieldtripInformation Jonathan Peelle Jonathan Peelle
Freesurfer Daniel Wakeman Daniel Wakeman Daniel Wakeman
FSL FSL-FEEDS Martin Monti Martin Monti Martin Monti
MNE Daniel Wakeman Daniel Wakeman Daniel Wakeman
SPM <style="vertical-align: top;"> (FMRI) (MEG/EEG) Rhodri Cusack Rhodri Cusack Daniel Mitchell, Jason Taylor, Rik Henson, Rhodri Cusack