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| Describe SecondLevel here. | __'''Second Level Analysis: Multiple Comparisons, SVC, ROI analysis'''__<<BR>> You can download a copy of Nadja and Ben's talks here: [[attachment:SecondLevel.ppt]] [[attachment:ROIAnalysis.pptx]] <<BR>> __'''Web Resources'''__<<BR>> Below is a list of web resources used in the talk <<BR>><<BR>> [[http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf|PickAtlas]]<<BR>> [[http://www.fil.ion.ucl.ac.uk/spm/|UCL's Pages]]<<BR>><<BR>> '''Multiple Subjects'''<<BR>><<BR>> [[http://mindhive.mit.edu/node/92|RFX and FFX on The MIT Wiki]]<<BR>> [[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf|Penny and Holmes(2003)]]<<BR>><<BR>> '''ROI Analysis'''<<BR>><<BR>> [[http://mindhive.mit.edu/node/101|ROI FAQ on The MIT Wiki]]<<BR>> [[http://marsbar.sourceforge.net/index.html|MarsBaR]]<<BR>> [[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach|tal2mni & mni2tal scripts]]<<BR>> __'''References'''__<<BR>><<BR>> '''Random Field Theory'''<<BR>><<BR>> [[attachment:Brett2003.pdf]] Brett et al., (2003) An Introduction to Random Field Theory<<BR>> [[attachment:Worsley2003.pdf]] Worsley et al., (2003) Developments in Random Field Theory '''ROI Analysis'''<<BR>> Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. ''Neuroimage'', 30(4), 1077-87. <<BR>> [[http://www.ncbi.nlm.nih.gov/pubmed/16635579|PMID: 16635579]]<<BR>> Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. ''Neuroimage'', 30(4), 1088-96; discussion 1097-9.<<BR>> [[http://www.ncbi.nlm.nih.gov/pubmed/16635578|PMID: 16635578]]<<BR>> Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.<<BR>> [[attachment:IndependenceROI.pdf]] <<BR>> Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher<<BR>> [[attachment:VulKanwisher.pdf]] <<BR>> Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. ''Neuroimage'', 19(4), 1303-1316. <<BR>> [[http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065|DOI: 10.1016/S1053-8119(03)00188-5]]<<BR>> Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. ''SCAN'', (2) 67-70<<BR>> [[attachment:PoldrackROIAnalysis.pdf]] <<BR>> Kawabata, Devlin (2011) Improving the reliability of functional localizers. ''Neuroimage'' <<BR>> [[http://www.ncbi.nlm.nih.gov/pubmed/21600292|PMID: 21600292]] |
Second Level Analysis: Multiple Comparisons, SVC, ROI analysis
You can download a copy of Nadja and Ben's talks here: SecondLevel.ppt ROIAnalysis.pptx
Web Resources
Below is a list of web resources used in the talk
PickAtlas
UCL's Pages
Multiple Subjects
RFX and FFX on The MIT Wiki
Penny and Holmes(2003)
ROI Analysis
ROI FAQ on The MIT Wiki
MarsBaR
tal2mni & mni2tal scripts
References
Random Field Theory
Brett2003.pdf Brett et al., (2003) An Introduction to Random Field Theory
Worsley2003.pdf Worsley et al., (2003) Developments in Random Field Theory
ROI Analysis
Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. Neuroimage, 30(4), 1077-87.
Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. Neuroimage, 30(4), 1088-96; discussion 1097-9.
Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.
Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher
Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. Neuroimage, 19(4), 1303-1316.
Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. SCAN, (2) 67-70
Kawabata, Devlin (2011) Improving the reliability of functional localizers. Neuroimage