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| See AutomaticAnalysisRecipes for some description of the automatic recipes used by the [AutomaticAnalysisIntroduction aa] tool | ''See AutomaticAnalysisRecipes for discussion of available recipes used by the [[http://imaging.mrc-cbu.cam.ac.uk/imaging/AutomaticAnalysisIntroduction|aa]] tool'' |
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| * SliceTiming * [wiki:FmBackground Undistort EPIs using field maps] |
It is a judgement call whether to slice timing or motion correction first - see the SliceTiming page for a discussion of this issue. * [[FmBackground|Undistort EPIs using field maps]] |
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| * ProcssingCoregistration * ProcssingNormalization * ProcssingSmoothing * ProcssingStatistics |
* ProcessingSliceTiming * ProcessingCoregistration * ProcessingNormalization * ProcessingSmoothing * ProcessingStatistics |
FMRI analysis stream
This page described the FMRI analysis stream for data from the CBU. We may mention data from the WBIC from time to time.
For the processing stream for older Bruker data from the WBIC, see BrukerAnalysisStream
See AutomaticAnalysisRecipes for discussion of available recipes used by the aa tool
The analysis begins with FetchingData
Check for CommonArtefacts
Run DataDiagnostics
If you find bad data, consider whether to RemoveBadScans
It is a judgement call whether to slice timing or motion correction first - see the SliceTiming page for a discussion of this issue.