FMRI analysis stream

This page described the FMRI analysis stream for data from the CBU. We may mention data from the WBIC from time to time.

For the processing stream for older Bruker data from the WBIC, see BrukerAnalysisStream

See AutomaticAnalysisRecipes for discussion of available recipes used by the [http://imaging.mrc-cbu.cam.ac.uk/imaging/AutomaticAnalysisIntroduction aa] tool

• The analysis begins with FetchingData

• Check for CommonArtefacts

• Run DataDiagnostics

• If you find bad data, consider whether to RemoveBadScans

It is a judgement call whether to slice timing or motion correction first - see the SliceTiming page for a discussion of this issue.

• [wiki:FmBackground Undistort EPIs using field maps]

• MotionCorrection

• ProcessingSliceTiming

• ProcessingCoregistration

• ProcessingNormalization

• ProcessingSmoothing

• ProcessingStatistics

• SmallVolumeCorrection

• RegionAnalysis