PrinciplesSpatialProcessing - MRC CBU Imaging Wiki

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Principles of spatial processing

Try [ John Ashburner's realignment chapter] in the [ Human Brain Function book] - second edition.

See also the other chapters on "Computational anatomy" in [ HBF2].

Mark Jenkinson and Steve Smith have an excellent introduction to the problems of optimizing in registration - see the [ HTML version] or [ pdf version].

You may get some benefit from the theory pages at the [ AIR website]. AIR is a realignment / coregistration / normalization program written by Roger Woods of UCLA. His pages go into details of the implementation of spatial transforms, some of which are relevant to SPM.