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| = Automating SPM99 Analyses = | = Automating SPM Analyses = |
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| SPM 99 PET analyses can be automated using the CBU CSV modfications to the standard SPM statistical design. | Visit PetModelAutomation99 for SPM99 |
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| Download this file attachment:cbu_csv99_ui.m, put it somewhere in your Matlab run path, and run it from the Matlab command window: | Visit PetModelAutomation2 for SPM2 |
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| {{{ >> cbu_csv99_ui }}} This utility is a modified version of the SPM99 interface (spm_spm_ui.m) for specifying the design and image file locations in a PET study. This automates the stages, after design type selection, of specifying group, subject, condition, replicate and covariate information by preparing a text file in advance and then telling SPM99 to read from this file. If you create a design in the standard point-click-type interface, a re-usable text file named ''design.csv'' is created in the requisite format. I have found this facility useful for running multiple 'what if' analyses - seeing what the effect is of dropping a subject, or a condition, or adding an extra covariate, etc. etc., at the cost of a few edits to a text file. Documentation is in attachment:details99.txt |
Visit PetModelAutomation5 for SPM5 |
Automating SPM Analyses
Visit PetModelAutomation99 for SPM99
Visit PetModelAutomation2 for SPM2
Visit PetModelAutomation5 for SPM5
Let me know if you have any problems or comments.
Updated by IanNimmoSmith on 5 September 2006.