Diff for "MriCro" - MRC CBU Imaging Wiki
location: Diff for "MriCro"
Differences between revisions 7 and 10 (spanning 3 versions)
Revision 7 as of 2006-07-31 08:26:01
Size: 1284
Editor: cmbg-cache-2
Comment:
Revision 10 as of 2009-11-09 15:52:54
Size: 1575
Editor: MartinMonti
Comment:
Deletions are marked like this. Additions are marked like this.
Line 4: Line 4:
MRIcro is an excellent free viewer for medical images written by [http://www.sph.sc.edu/comd/rorden/ Chris Rorden]. It has many facilities, most notably ROI drawing and analysis.   MRIcro is an excellent free viewer for medical images written by [http://www.sph.sc.edu/comd/rorden/ Chris Rorden]. It has many facilities, most notably ROI drawing and analysis. The newer version of the software is [http://www.sph.sc.edu/comd/rorden/mricron/ MRIcron].
Line 10: Line 10:
== Using MRIcro at the CBU == == Using MRIcro/MRIcron at the CBU ==
Line 17: Line 17:
or, for MRIcron,

{{{
mricron &
}}}

Line 18: Line 25:

MRIcron is located in /imaging/local/linux/bin/mricron.

== Using DCM2NII ==

Type in a terminal:
{{{
dcm2nii &
}}}
to get the help info.

MRIcro information

MRIcro is an excellent free viewer for medical images written by [http://www.sph.sc.edu/comd/rorden/ Chris Rorden]. It has many facilities, most notably ROI drawing and analysis. The newer version of the software is [http://www.sph.sc.edu/comd/rorden/mricron/ MRIcron].

See the [http://www.sph.sc.edu/comd/rorden/mricro.html MRIcro manual], [http://www.sph.sc.edu/comd/rorden/mritut.html MRIcro tutorial] and [http://www.sph.sc.edu/comd/rorden/faq.html MRIcro FAQ] - as well as other links on [http://www.sph.sc.edu/comd/rorden/ Chris Rorden's home page]. The MRIcro tutorial has instructions on creating a region of interest, and on how to prepare scans of damaged brains for spatial normalisation.

One of the features in MRIcro is the ability to display points on selected slices - such as maxima from various imaging studies. This is covered in the [http://www.sph.sc.edu/comd/rorden/faq.html#hotspot hotspot section] of the MRIcro FAQ, and also (for an older version) by our MricroPoints page.

Using MRIcro/MRIcron at the CBU

Download to a windows machine to run locally. To start on the linux systems, use:

startmricro &

or, for MRIcron,

mricron &

(the '&' at the end has the effect of returning you to the terminal where you typed the command rather than leaving it hanging until MriCro closes)

MRIcron is located in /imaging/local/linux/bin/mricron.

Using DCM2NII

Type in a terminal:

dcm2nii &

to get the help info.

CbuImaging: MriCro (last edited 2013-03-07 21:24:30 by localhost)