Diff for "MriBids" - MRC CBU Imaging Wiki
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The raw data from the scanner are in `DICOM` format. They are stored at `/mridata/cbu/[your project code]`. To start working with the data you first need to convert them to `NIfTI` format and organise them according to the [[https://bids-specification.readthedocs.io/en/stable/|BIDS standard]].
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The raw data from the scanner are in `DICOM` format. They are stored at:`/mridata/cbu/[your project code]`. To start working with the data you first need to convert them to `NIfTI` format and organise them according to [[https://bids-specification.readthedocs.io/en/stable/|BIDS standard]]. Several conversion tools exist (see a full list [[https://bids.neuroimaging.io/benefits#converters|here]]. We recommend using a `Python`-based converter [[https://heudiconv.readthedocs.io/en/latest/index.html|HeuDiConv]].
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3 steps: * one * two * three `HeuDiConv` is available on our computing system as an Apptainer image.

Table of contents:

Contents

  1. Converting MRI DICOM data to BIDS format
    1. One

Converting MRI DICOM data to BIDS format

The raw data from the scanner are in DICOM format. They are stored at /mridata/cbu/[your project code]. To start working with the data you first need to convert them to NIfTI format and organise them according to the BIDS standard.

Several conversion tools exist (see a full list here. We recommend using a Python-based converter HeuDiConv.

HeuDiConv is available on our computing system as an Apptainer image.

One

...