Full Text Search: "linkto:"MatthewBrett"" - MRC CBU Imaging Wiki
location: Full Text Search: "linkto:"MatthewBrett""

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MakingHomePages . . . 7 matches
...ake yourself a wiki-specific personal page connected to your username (e.g. mine is MatthewBrett), click on your username in the bar at the top or at the left of the page (dependin...

3.1k - rev: 6 (current) last modified: 2013-03-07 21:20:04

SpmTips . . . 2 matches
...7 that prevents the necessary GUI callback being executed in the contrast GUI. I (MatthewBrett) have briefly tried to track it down, but it's a real horror. For now, you can fix...

3.1k - rev: 6 (current) last modified: 2013-03-07 21:22:58

SpmMiniCourse2007 . . . 2 matches
...| [[attachment:cbu_spm_course_2007_rc_biophysics.ppt]] || ||Spatial Preprocessing ||MatthewBrett ||realignment, normalisation, smoothing, segmenting || [[attachment:cbu_spm_course_...

1.3k - rev: 12 (current) last modified: 2013-03-07 21:23:59

RemoveBadScans . . . 2 matches
...r SPM99. It will not work with SPM2 or SPM5. To remove scans in SPM2 and SPM5, I (MatthewBrett) would recommend that you: 1. Find a way of doing any slice timing correction usi...

2.2k - rev: 4 (current) last modified: 2013-03-07 21:22:56

DiffusionFdtNotes . . . 2 matches
...dt diffusion analysis = For CBU data. These are just notes of work in progress by MatthewBrett. * FDT documentation: http://www.fmrib.ox.ac.uk/fsl/fdt/index.html * FDT FAQ ent...

8.4k - rev: 38 (current) last modified: 2013-03-07 21:23:56

DesignBasics . . . 2 matches
...gn basics = Please see Rik Henson's excellent discussion of fMRI DesignEfficiency MatthewBrett gave a talk at HBM2006 on [[http://imaging.mrc-cbu.cam.ac.uk/pdfs/common_errors.pdf...

1.7k - rev: 4 (current) last modified: 2013-03-07 21:23:08

AnalysisDefaults . . . 2 matches
...alyze in SPM, with some discussion of the AnalysisPrinciples involved. Personally (MatthewBrett) I would recommend that someone new to imaging, or new to SPM, does a few analyses ...

13.3k - rev: 24 (current) last modified: 2013-03-07 21:23:53

WikiWord . . . 1 match
...e word, surrounded by characters that are not upper case. WikiWord examples: are MatthewBrett, HelpOnLinking, WikiName, !One2Three. Note that the last is a WikiWord, where I su...

0.6k - rev: 11 (current) last modified: 2013-03-07 21:20:04

UsingThisWiki . . . 1 match
...ase sign your edits somewhere by leaving your login name, e.g. I just wrote this ([[MatthewBrett|MyName]]) == Making home pages == Please see CbuBaseWiki:MakingHomePages == Confi...

3.7k - rev: 41 (current) last modified: 2016-10-26 16:04:55

UsingAnalyze . . . 1 match
...egularly. * [[#Index|Return to Index]] Page written by [[http://www.sph.sc.edu/comd/rorden/|Chris Rorden]], MatthewBrett and [[mailto:adrian.owen@mrc-cbu.cam.ac.uk|Adrian Owen.]]...

15.0k - rev: 8 (current) last modified: 2013-03-07 21:23:00

UncorrectedThreshold . . . 1 match
...m in X Y and Z directions, and the example analysis had 200 degrees of freedom) I (MatthewBrett) personally prefer less arbitrary thresholds for reporting suggestive results, such...

2.6k - rev: 5 (current) last modified: 2013-03-07 21:23:04

TipsForSuccessfulScanning . . . 1 match
... scanner. Please sign all your tips so we know where they came from. For example, MatthewBrett wrote this text. === Subjects === 1. Pre-test your subjects the week before at th...

1.2k - rev: 10 (current) last modified: 2013-03-07 21:24:08

SpmQuickStart . . . 1 match
...ab-Book.pdf|SPM course lab book]] practical excercises to get a feel for SPM. Of course, see also the SpmManuals, which include step-by-step guides to analyses. MatthewBrett ...

0.6k - rev: 3 (current) last modified: 2013-03-07 21:24:00

SmallVolumeCorrection . . . 1 match
...e containing only 13 x 13 x 13 voxels, all non-zero, with 1 x 1 x 1 mm voxel size. MatthewBrett 29/9/99 == Reference == <<Anchor(W96)>> Worsley, K.J., Marrett, S., Neelin, P., V...

10.9k - rev: 16 (current) last modified: 2013-03-07 21:24:29

SliceTiming . . . 1 match
...{attachment:interpolation_spike.png}} Note that SPM uses sinc interpolation for slice timing, so will tend to spread artefacts over a wide time window. (MatthewBrett) RikHenson...

5.8k - rev: 8 (current) last modified: 2013-03-07 21:23:05

SliceOverlayHelp . . . 1 match
...yleft, under the terms of the GNU public licence; see licence.man or http://www.gnu.org/copyleft Still beta - take care. Please report problems to Matthew Brett }}} MatthewBrett...

8.2k - rev: 3 (current) last modified: 2013-03-07 21:22:55

SiemensDiffusionImages . . . 1 match
... from isotropy (equal diffusion in all directions). See http://www.medical.siemens.com/siemens/sv_SE/gg_mr_FBAs/files/brochures/DTI_HT_FINAL_HI.pdf for more detail. MatthewBrett...

1.1k - rev: 6 (current) last modified: 2013-03-07 21:23:02

ReverseNormalization . . . 1 match
...n.mat` file), leave the voxel sizes and bounding box as default, and the select the Apply to option to apply these inverse parameters to an image in template space... MatthewBrett...

0.8k - rev: 2 (current) last modified: 2013-03-07 21:22:57

ProcessingSmoothing . . . 1 match
...of functional areas that have not been very well-matched with normalization, but I (MatthewBrett) know of no direct evidence to support this. Probably more importantly, it can inc...

1.1k - rev: 4 (current) last modified: 2013-03-07 21:24:05

PrinciplesStatistics . . . 1 match
...to Andrew Holmes, Jon Simons and Thomasin Andrews for their helpful comments on various drafts of this page. Of course any errors are all mine... ---- MatthewBrett ''19/8/99 (FB)''...

42.3k - rev: 9 (current) last modified: 2013-03-07 21:24:09

PrinciplesRandomFields . . . 1 match
...from anyone with suggestions for improvements, detected errors, or other feedback. MatthewBrett 19/8/99 ''(FB)'' == References == Worsley, K.J., Marrett, S., Neelin, P., and Eva...

24.3k - rev: 10 (current) last modified: 2013-03-07 21:22:55

PrinciplesMultipleComparisons . . . 1 match
...Another method that has been widely used is to use an UncorrectedThreshold. In my (MatthewBrett) view, this method can be extremely misleading to your readers, and should be avoid...

1.0k - rev: 3 (current) last modified: 2013-03-07 21:23:02

MniTalairach . . . 1 match
...iderably better using an automated approach. Kalina Christoff, RhodriCusack and I (MatthewBrett) used this method for an abstract presented at HBM - see http://www.mrc-cbu.cam.ac....

16.4k - rev: 9 (current) last modified: 2017-01-30 12:58:49

MarsBar . . . 1 match
...e CBU computing page]]). MarsBaR should be available via the toolboxes button (let MatthewBrett know if not). You can also make MarsBaR available by manually adding the path: To...

1.5k - rev: 15 (current) last modified: 2013-03-07 21:22:58

LearningUnix . . . 1 match
...tory after you have started SPM. Warning: don't change directory within matlab/SPM, using the "cd" command in the matlab window; it may not work as expected. MatthewBrett 11/10/99...

5.5k - rev: 13 (current) last modified: 2013-03-07 21:24:06

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