Local help for MarsBaR

Some pages showing basic steps (with screenshots) exist.

Steps for creating ROIs from an SPM cluster, and exporting ROIs to nii or hdr/img.

Steps for extracting signal from Regions of Interest, for import into Excel/SPSS/etc., to do second level analysis.

Here are some marsbar batch files (JessicaGrahn):

marsbarbatch.m : this batch file takes a list of coordinates and makes sphere ROIs, saving them in MarsBar and .nii format.

marsbarbatchextract.m : this batch takes all rois in a directory, and extracts data from all the con/beta images in another directory, saving the data to a text file.

marsbarbatchconvert.m : this batch file converts rois to .nii format