Diff for "FslMaintenance" - MRC CBU Imaging Wiki
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Revision 1 as of 2009-11-10 11:50:22
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== FSL Path Structure ==
Line 6: Line 7:
{{{
Line 7: Line 9:
/imaging/local/software/fsl/fsl64/
/imaging/local/software/fsl/fsl64/fsl-4.1.2/
/imaging/local/software/fsl/fsl64/fsl-4.1.4/
...
/imaging/local/software/fsl/fsl32/
/imaging/local/software/fsl/fsl32/fsl-4.1.2/
/imaging/local/software/fsl/fsl32/fsl-4.1.4/
...
}}}

== Installing a new FSL version ==

(The detailed instructions are available on the FSL website: http://www.fmrib.ox.ac.uk/fsl/fsl/downloading.html )

When a new version comes out do the following:

1. Create a new folder (e.g. /imaging/local/software/fsl/fsl64/fsl-#.#.#/
2. Download in there the new version file (typically a .tar.gz file)
3. unzip/untar in that folder.

As a result, the actual commands should be found in the following path (for, say version fsl-5.0.1 64bit)
{{{
/imaging/local/software/fsl/fsl64/fsl-5.0.1/fsl/bin/
}}}

FSL Maintenance Info

This is for maintaing FSL software on the CBU cluster.

FSL Path Structure

All FSL software lives in:

/imaging/local/software/fsl/
/imaging/local/software/fsl/fsl64/
/imaging/local/software/fsl/fsl64/fsl-4.1.2/ 
/imaging/local/software/fsl/fsl64/fsl-4.1.4/
... 
/imaging/local/software/fsl/fsl32/
/imaging/local/software/fsl/fsl32/fsl-4.1.2/ 
/imaging/local/software/fsl/fsl32/fsl-4.1.4/
...

Installing a new FSL version

(The detailed instructions are available on the FSL website: http://www.fmrib.ox.ac.uk/fsl/fsl/downloading.html )

When a new version comes out do the following:

1. Create a new folder (e.g. /imaging/local/software/fsl/fsl64/fsl-#.#.#/ 2. Download in there the new version file (typically a .tar.gz file) 3. unzip/untar in that folder.

As a result, the actual commands should be found in the following path (for, say version fsl-5.0.1 64bit)

/imaging/local/software/fsl/fsl64/fsl-5.0.1/fsl/bin/

CbuImaging: FslMaintenance (last edited 2013-03-07 21:22:56 by localhost)