= FSL information = FSL is the FMRIB Software Library. It is a C / C++ / Tcl/Tk package written by the Oxford analysis group. For more information see: * Main page: http://www.fmrib.ox.ac.uk/fsl * FAQ: http://www.fmrib.ox.ac.uk/fslfaq/ * FSL course notes: http://www.fmrib.ox.ac.uk/fslcourse/ On our system, the current version of FSL (that is, the version you get by typing 'fsl' at the command prompt) is the one pointed to by the link `/imaging/local/linux/fsl`. At the time of writing this is the slightly outdated 3.2 version. You can find the FSL example data set (http://www.fmrib.ox.ac.uk/fsl/feeds/doc/index.html) in `/imaging/local/fsl/feeds`. The data for the FSL course is in `/imaging/local/fsl/fslcourse`. Any problems, report them to MatthewBrett or RhodriCusack. == Using a specific version of FSL on the CBU systems == If you need to use a specific version, rather than the one pointed to by `/imaging/local/linux/bin/fsl`, then define the path to the version of FSL you want, and put something like this in your `~/.cshrc` file: {{{ # FSL stuff setenv FSLDIR /imaging/local/linux/bin/fsl-3.3.11 source ${FSLDIR}/etc/fslconf/fsl.csh set path = (${FSLDIR}/bin $path) }}} Note that the version that FSL says it is doesn't correspond to the version it actually is. For this, use "which fsl" at the unix prompt.