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Note that the version that FSL says it is doesn't correspond to the version it actually is. For this, use "which fsl" at the unix prompt.

FSL information

FSL is the FMRIB Software Library. It is a C / C++ / Tcl/Tk package written by the Oxford analysis group.

For more information see:

On our system, the current version of FSL (that is, the version you get by typing 'fsl' at the command prompt) is the one pointed to by the link /imaging/local/linux/fsl. At the time of writing this is the slightly outdated 3.2 version.

You can find the FSL example data set (http://www.fmrib.ox.ac.uk/fsl/feeds/doc/index.html) in /imaging/local/fsl/feeds.

The data for the FSL course is in /imaging/local/fsl/fslcourse.

Any problems, report them to MatthewBrett or RhodriCusack.

Using a specific version of FSL on the CBU systems

If you need to use a specific version, rather than the one pointed to by /imaging/local/linux/bin/fsl, then define the path to the version of FSL you want, and put something like this in your ~/.cshrc file:

# FSL stuff
setenv FSLDIR /imaging/local/linux/bin/fsl-3.3.11
source ${FSLDIR}/etc/fslconf/fsl.csh
set path = (${FSLDIR}/bin $path)

Note that the version that FSL says it is doesn't correspond to the version it actually is. For this, use "which fsl" at the unix prompt.

CbuImaging: FslInformation (last edited 2019-09-11 13:50:27 by MartaCorreia)