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← Revision 5 as of 2013-03-07 21:23:08 ⇥
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| # this is an example of an automatic labeling script for the left hemisphere, for the PPG that we have drawn on the study average cortical surface called "myAverage" | # this is an example of an automatic labeling script for the left hemisphere, # for the PPG that we have drawn on the study average cortical surface called "myAverage" |
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| echo "=======================================================" |
echo "=======================================================" |
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| }}} |
#
# this is an example of an automatic labeling script for the left hemisphere,
# for the PPG that we have drawn on the study average cortical surface called "myAverage"
## variables
## Freesurfer directory
thePath='/imaging/yourusername/yourproject/subjects'
subjects=(
'CBUXXXXXX' \
'CBUYYYYYY' \
)
## Processing:
nsubjects=${#subjects[*]}
lastsubj=`expr $nsubjects - 1`
for m in `seq 0 ${lastsubj}`
do
echo "======================================================="
echo " "
echo " Computing hPPG cortex surface label left hemisphere"
echo " "
echo "======================================================="
mri_label2label \
--srcsubject myAverage \
--srclabel ${thePath}/myAverage/label/lh.hPPG.label \
--trgsubject ${subjects[m]} \
--trglabel ${thePath}/${subjects[m]}/label/lh.hPPG.label \
--hemi lh \
--regmethod surface
done # subjects lh