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| ||<tablewidth="648px"> ||<100% bgcolor="#FFFF99">'''Using a field-map to undistort EPIs''' [wiki:FmBackground Background] [wiki:FmPower Improvement in power!] [wiki:FmFieldmaps Acquiring fieldmaps] [wiki:FmDownload Download] [wiki:FmRequirements What you'll need to undistort an EPI data series] [wiki:FmReference Guide and reference] [wiki:FmExample Step-by-step example] [wiki:FmBatch Batch mode] || || |
||<100% bgcolor="#FFFF99">'''Using a field-map to undistort EPIs'''<<BR>>[[FmBackground|Background]]<<BR>>[[FmPower|Improvement in power!]]<<BR>>[[FmFieldmaps|Acquiring fieldmaps]]<<BR>>[[FmDownload|Download]]<<BR>>[[FmRequirements|What you'll need to undistort an EPI data series]]<<BR>>[[FmReference|Guide and reference]]<<BR>>[[FmExample|Step-by-step example]]<<BR>>[[FmBatch|Batch mode]]|| |
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| == What software you'll need == | === What software you'll need === |
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| If you are an academic user you may download this software for free immediately: please first download a license form. [http://imaging.mrc-cbu.cam.ac.uk/pdfs/undistortion_licence.pdf Download this one] if you are downloading the compiled version, or [http://imaging.mrc-cbu.cam.ac.uk/pdfs/undistortion_source_licence.pdf this one] if you are downloading the source code. Before you download the software, please sign and return two copies of the appropriate form. | If you are an academic user you may download this software for free immediately: please first download a [[http://www.mrc-cbu.cam.ac.uk/~rhodri/undistortion_source_licence2007.pdf|license form]]. Before you download the software, please sign and return two copies of the appropriate form. |
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| If you are a commercial user please email [mailto:rhodri.cusack@mrc.cbu.cam.ac.uk rhodri.cusack@mrc-cbu.cam.ac.uk] | If you are a commercial user please email rhodri.cusack@mrc.cbu.cam.ac.uk |
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| ''This software is not to be used for medical diagnosis. The author or the MRC take no responsibility for the results of its use.'' | === Download version 3.03 === [[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_siemens_exampledataset.tar|Siemens example dataset (2MB)]] |
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| === Your details === We would be very grateful if you would provide the following information. Your details will be kept secure and not passed on to any third party. |
[[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_exampledataset.tar|Bruker Example dataset (111MB)]] |
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| [[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_solaris.tar|Sun (solaris) (4MB)]] [[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_linux.tar|Linux (Red Hat) (4MB)]] [[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_windows.tar|Windows (4MB)]] [[http://imaging.mrc-cbu.cam.ac.uk/downloads/fmu/fmu_v3p03_withsrc.tar|Source code (all platforms, requires Perl, and either GCC or MS Visual Studio or CXX) (17MB)]] |
Using a field-map to undistort EPIs |
Download
What software you'll need
Matlab
SPM 99 or above
If you are using Bruker format input files, a Perl interpreter (e.g, from cygwin.com)
If you wish to compile the code, you'll need Perl and gcc or cxx, or a love of the joy of programming.
What data you'll need
Field maps (see 'Acquiring fieldmaps' above)
Echo planar functional data in Analyze format
Licensing
If you are an academic user you may download this software for free immediately: please first download a license form. Before you download the software, please sign and return two copies of the appropriate form.
If you are a commercial user please email rhodri.cusack@mrc.cbu.cam.ac.uk
Download version 3.03
Bruker Example dataset (111MB)
Source code (all platforms, requires Perl, and either GCC or MS Visual Studio or CXX) (17MB)