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⇤ ← Revision 1 as of 2009-11-12 19:45:31
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| === fMRI === | |
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| * [javascript:void(0);/*1258054958393*/ Stats] | * Stats |
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| === fMRI === | === Pre-processing === ||<tablewidth="100%" tablestyle="text-align: left;">'''Name''' ||'''Type''' ||'''Description''' ||'''Path''' ||'''Lang''' ||'''Uploaded''' || ||movfilsub.m ||fMRI Preproc ||Takes movement txt files for each scanning run, calculates average eucleidian distance between consequtive rows and returns various stats. ||/imaging/kk02/_spm ||Matlab, needs SPM || || |
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=== Utils === ||<tablewidth="100%" tablestyle="text-align: left;">'''Name''' ||'''Type''' ||'''Description''' ||'''Path''' ||'''Lang''' ||'''Uploaded''' || ||aa_plot.m ||fMRI utils ||Plots FWE, FDR and uncorrected results for every contrast specified in SPM.mat - i.e. 3 plots for a contrast and converts resulting .ps files into jpegs.||/imaging/kk02/_auto ||Matlab, needs SPM || || |
Code
[DRAFT]
We are creating a page for sharing code.
The point is not a formal code repository or uploading only perfectly documented and elegant scripts but rather sharing existing implementations and avoiding redundant code writing. Much can be gained from just reading other people's code as ad hoc implementation is usually impossible anyway.
Please make sure that your code is at least somewhat documented (e.g. via comments in code) and leave a brief description of what it does.
- Pre-processing
- Stats
- Utils
Pre-processing
Name |
Type |
Description |
Path |
Lang |
Uploaded |
movfilsub.m |
fMRI Preproc |
Takes movement txt files for each scanning run, calculates average eucleidian distance between consequtive rows and returns various stats. |
/imaging/kk02/_spm |
Matlab, needs SPM |
|
Stats
Name |
Type |
Description |
Path |
Lang |
Uploaded |
aa_first_conn.m |
fMRI Stats |
First level functional connectivity analysis with using the seed voxel beta series as a contrast vector over trial betas. Needs aa framework, just add to the aap tasklist in the study script/recipe. |
/imaging/kk02/_auto |
Matlab, needs SPM |
|
Utils
Name |
Type |
Description |
Path |
Lang |
Uploaded |
aa_plot.m |
fMRI utils |
Plots FWE, FDR and uncorrected results for every contrast specified in SPM.mat - i.e. 3 plots for a contrast and converts resulting .ps files into jpegs. |
/imaging/kk02/_auto |
Matlab, needs SPM |
|