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| ||<style="vertical-align: top;"> Welcome to the CBU imaging wiki. This wiki covers MRI, [Meg:HomePage:MEG] and [Eeg:Homepage:EEG] are in separate wikis. [:DesigningStudies:Designing studies] - This covers both the principles behind the design of a good imaging experiment, and some practicalities that are useful in preparation for acquiring data. [:AnalysisPrinciples:Principles of analysis] - A summary of the theory behind neuroimaging with fMRI. [:AnalysisSoftware:Analysis software] - A more practical guide to the software we have installed, how to launch it and tips to help you use it effectively. [:AnalysisHardware:Using CBU computers] - The machines available, and how to work with them. [:MeetingsListsContacts:Meetings] - How to learn from and contribute to the Cambridge Imaging community. ||<style="vertical-align: top;"> || ||||<style="vertical-align: top; text-align: left;">'''Keep up to date :-''' Read an overview of ScientificComputing at the CBU, or check out ImagingComputingDevelopments for updates to hardware & software to support imagers at CBU. || || ||||<style="vertical-align: top; text-align: left;">'''Latest additions :-''' IigSchedule updated week by week. || ||||<style="vertical-align: top; text-align: left;">'''Student Forum pages :-''' StudentForum || ||||<style="vertical-align: top; text-align: left;">ArchivedNews || CBU Imaging Website. Copyright MRC Cognition and Brain Sciences Unit 2008. |
= Welcome = || Neuroimaging studies are carried out on the CBU site using a Siemens 3T Tim Trio Magnetic Resonance Imaging (or MRI) scanner (see the MRI facility wiki) that is wholly dedicated to studies in Cognitive Neuroscience. The CBU now constitutes one of the largest concentrations of cognitive scientists and neuroscientists on a single site anywhere in the world, with nearly 100 active scientists, students and research staff. A priority in the CBU research strategy over the last 5 years has been to develop a strong research programme in neuroimaging, working closely with the Wolfson Brain Imaging Centre, and more than half of the scientific staff and students are actively involved in neuroimaging projects. From emotions and memories to language and learning, functional neuroimaging is being applied in many different areas of Cognitive Neuroscience. In many cases, this research relies upon support from healthy volunteers although neuroimaging studies are also being conducted in various clinical populations, including depression, anxiety, Parkinson's disease and Alzheimer's disease. || attachment:brainsmall.jpg || This wiki covers (f)MRI, [wiki:CbuMeg:CbuMeg MEG] and [wiki:CbuEeg:CbuEeg EEG] have their own wikis. == Shortcuts == ||||||||||||||<tablewidth="100%">|| ||||||||||||||<style="background-color: #E0E0FF; font-size: 24">'''~+General+~''' || |||||||||||||||| ||<style="text-align: center;"> '''[wiki:CbuImaging:UsingVNC VNC]''' [[BR]] '''[wiki:CbuImaging:AvailableSoftware Software]''' [[BR]] '''[wiki:CbuMethods:unixsurvivalguide Unix Survival Guide]''' ||<style="text-align: center;"> '''[http://intranet.mrc-cbu.cam.ac.uk/computing/ CBU Computing Intranet]''' [[BR]] '''[wiki:CbuMeg:Beginners/MatlabIntroCBU?action=AttachFile&do=get&target=RussellComputing.pdf Overview CBU Computing]''' ||<style="text-align: center;"> '''[wiki:CbuMeg:Beginners Beginners]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:LoadShare Load Share]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:IigSchedule IIG]''' [[BR]] '''[http://intranet.mrc-cbu.cam.ac.uk/minutes/imc/ IMC]''' [[BR]] '''[http://intranet.mrc-cbu.cam.ac.uk/imaging/mriadmin/ Internal Admin]''' ||<style="text-align: center;"> '''[wiki:CbuMethods:stimdatabases Databases/Tools]''' ||<style="text-align: center;"> '''[wiki:CbuMethods:NavigateOurWiki Navigate our Wikis]''' || ||||||||||||||<tablewidth="100%">|| ||||||||||||||<style="background-color: #E0E0FF; font-size: 24">'''~+fMRI Imaging+~''' || |||||||||||||||| ||<style="text-align: center;">'''[wiki:CbuImaging:AnalysisPrinciples Analysis Principles]''' [[BR]] '''[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/ fMRI Handbook]''' [[BR]] '''[wiki:CbuImaging:SpmMiniCourse2008 SPM Mini Course]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:FreesurferGoodies FreeSurfer]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:ImagingSequences Sequences]''' ||<style="text-align: center;"> '''[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery Stimulus Delivery]''' [[BR]] '''[wiki:CbuMethods:psychophysiology Psychophysiology]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:DataDiagnostics Diagnostics]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:PrinciplesStatistics Stats Principles]''' [[BR]] '''[wiki:CbuImaging:PrinciplesRandomEffects RFX]''' [[BR]] '''[wiki:CbuImaging:DesignEfficiency Design Efficiency]''' || ||<style="text-align: center;"> '''[wiki:CbuImaging:BrodmannAreas Brodmann Areas]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:MarsBar MarsBar]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:MeetingsListsContacts Meetings etc.]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:MultiVoxelPatternAnalysis MVPA]''' ||<style="text-align: center;"> '''[wiki:CbuImaging:AnalyzingDiffusion DTI]''' ||<style="text-align: center;"> '''[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html Rik Henson's SPM scripts]''' || '''[http://www.mrc-cbu.cam.ac.uk/research/methods/imaginganalysis.html Back to General Pages].''' '' Hint: if you're using the search button on the left, be sure to press the "Text" button if you want to search the content of pages rather than just their titles.'' '' '' '' '' |
Welcome
Neuroimaging studies are carried out on the CBU site using a Siemens 3T Tim Trio Magnetic Resonance Imaging (or MRI) scanner (see the MRI facility wiki) that is wholly dedicated to studies in Cognitive Neuroscience. The CBU now constitutes one of the largest concentrations of cognitive scientists and neuroscientists on a single site anywhere in the world, with nearly 100 active scientists, students and research staff. A priority in the CBU research strategy over the last 5 years has been to develop a strong research programme in neuroimaging, working closely with the Wolfson Brain Imaging Centre, and more than half of the scientific staff and students are actively involved in neuroimaging projects. From emotions and memories to language and learning, functional neuroimaging is being applied in many different areas of Cognitive Neuroscience. In many cases, this research relies upon support from healthy volunteers although neuroimaging studies are also being conducted in various clinical populations, including depression, anxiety, Parkinson's disease and Alzheimer's disease. |
attachment:brainsmall.jpg |
This wiki covers (f)MRI, [wiki:CbuMeg MEG] and [wiki:CbuEeg EEG] have their own wikis.
Shortcuts
General |
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[wiki:UsingVNC VNC] BR [wiki:AvailableSoftware Software] BR [wiki:unixsurvivalguide Unix Survival Guide] |
[http://intranet.mrc-cbu.cam.ac.uk/computing/ CBU Computing Intranet] BR [wiki:Beginners/MatlabIntroCBU?action=AttachFile&do=get&target=RussellComputing.pdf Overview CBU Computing] |
[wiki:Beginners Beginners] |
[wiki:LoadShare Load Share] |
[wiki:IigSchedule IIG] BR [http://intranet.mrc-cbu.cam.ac.uk/minutes/imc/ IMC] BR [http://intranet.mrc-cbu.cam.ac.uk/imaging/mriadmin/ Internal Admin] |
[wiki:stimdatabases Databases/Tools] |
[wiki:NavigateOurWiki Navigate our Wikis] |
fMRI Imaging |
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[wiki:AnalysisPrinciples Analysis Principles] BR [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/ fMRI Handbook] BR [wiki:SpmMiniCourse2008 SPM Mini Course] |
[wiki:FreesurferGoodies FreeSurfer] |
[wiki:ImagingSequences Sequences] |
[http://imaging.mrc-cbu.cam.ac.uk/mri/CbuStimulusDelivery Stimulus Delivery] BR [wiki:psychophysiology Psychophysiology] |
[wiki:DataDiagnostics Diagnostics] |
[wiki:PrinciplesStatistics Stats Principles] BR [wiki:PrinciplesRandomEffects RFX] BR [wiki:DesignEfficiency Design Efficiency] |
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[wiki:BrodmannAreas Brodmann Areas] |
[wiki:MeetingsListsContacts Meetings etc.] |
[wiki:MultiVoxelPatternAnalysis MVPA] |
[wiki:AnalyzingDiffusion DTI] |
[http://www.mrc-cbu.cam.ac.uk/people/rik.henson/personal/analysis.html Rik Henson's SPM scripts] |
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[http://www.mrc-cbu.cam.ac.uk/research/methods/imaginganalysis.html Back to General Pages].
Hint: if you're using the search button on the left, be sure to press the "Text" button if you want to search the content of pages rather than just their titles.