<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>BrainVisaInformation</title><revhistory><revision><revnumber>8</revnumber><date>2013-03-07 21:24:03</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>7</revnumber><date>2007-05-02 16:42:39</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>6</revnumber><date>2007-05-02 16:42:20</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>5</revnumber><date>2007-05-01 15:54:20</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>4</revnumber><date>2007-05-01 15:53:57</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>3</revnumber><date>2007-05-01 15:49:38</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>2</revnumber><date>2007-05-01 15:49:09</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>1</revnumber><date>2007-05-01 15:45:54</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision></revhistory></articleinfo><section><title>BrainVisa / anatomist</title><itemizedlist><listitem><para>General page for both programs: <ulink url="http://brainvisa.info/"/> </para></listitem><listitem><para><ulink url="https://imaging.mrc-cbu.cam.ac.uk/imaging/BrainVisaInformation/imaging/BrainVisa#">BrainVisa</ulink> information: <ulink url="http://brainvisa.info/doc/brainvisa/en/processes/aboutBrainVISA.html"/> </para></listitem><listitem><para>Anatomist information: <ulink url="http://brainvisa.info/doc/brainvisa/en/processes/aboutAnatomist.html"/> </para></listitem><listitem><para>FAQ: <ulink url="http://brainvisa.info/faq.html"/> </para></listitem></itemizedlist><para><ulink url="https://imaging.mrc-cbu.cam.ac.uk/imaging/BrainVisaInformation/imaging/BrainVisa#">BrainVisa</ulink> implements a pipeline environment for batch processing imaging data.  It is written in Python, and has a rather nice GUI.  Its main uses are for anatomical image processing and <ulink url="https://imaging.mrc-cbu.cam.ac.uk/imaging/BrainVisaInformation/imaging/AnalyzingDiffusion#">AnalyzingDiffusion</ulink>. </para><para>Anatomist is an image display program that is well integrated with <ulink url="https://imaging.mrc-cbu.cam.ac.uk/imaging/BrainVisaInformation/imaging/BrainVisa#">BrainVisa</ulink>.  </para><para>It is installed on our imaging system.  To run it on the linux systems, first do </para><screen><![CDATA[setenv PATH /imaging/local/linux/brainvisa/bin:$PATH]]></screen><para>then you can run <ulink url="https://imaging.mrc-cbu.cam.ac.uk/imaging/BrainVisaInformation/imaging/BrainVisa#">BrainVisa</ulink> with <code>brainvisa</code>, and similarly <code>anatomist</code>. </para><section><title>Problems with VNC and other remote displays</title><para>Anatomist may not be of much use to you, because it relies on OpenGL graphics features that do not work over our VNC or remote X connections.  You'll probably end up having to install it on your own machine.  See: <ulink url="http://brainvisa.info/download.html"/> </para></section></section></article>