Diff for "BitOfScript" - MRC CBU Imaging Wiki
location: Diff for "BitOfScript"
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Revision 5 as of 2006-10-03 10:53:11
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Revision 6 as of 2013-03-07 21:22:56
Size: 809
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Comment: converted to 1.6 markup
Deletions are marked like this. Additions are marked like this.
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 ''do_time_place[[BR]]
 realign_spm5[[BR]]
 smooth_spm5[[BR]]
 one_sub_sess_model_moves5'' (OneSubSess)[[BR]]
 ''do_time_place<<BR>>
 realign_spm5<<BR>>
 smooth_spm5<<BR>>
 one_sub_sess_model_moves5'' (OneSubSess)<<BR>>
Line 40: Line 40:
 ''one_sub_sess_con_moves5[[BR]]''  ''one_sub_sess_con_moves5<<BR>>''

Here is a typical structure for a batch script

  1. {{{Code to set up parameters across all the datasets

and do bits of analysis that are can be grouped }}}

  1. {{{Loop over Subjects and Sessions
  • and perform the Main Crunch

}}}

E.g.

  1. % reorientation, slice timing
    do_time_place5
    realign_spm5
    smooth_spm5
    
    % hp filter
    MYV.hf_cut = 60;
  2. % Run models
    for sb = 1:length(MYV.subjects)
      for ss = 1:length(MYV.sesses)
        one_sub_sess_model_moves5(MYV, sb, ss);
        one_sub_sess_con_moves5(MYV, sb, ss);
      end
    end

Here

  • do_time_place
    realign_spm5
    smooth_spm5
    one_sub_sess_model_moves5
    (OneSubSess)

and

  • one_sub_sess_con_moves5

are subscripts tailored to specialised parts of the sequence.


CbuImaging: BitOfScript (last edited 2013-03-07 21:22:56 by localhost)