AnalyzingDiffusion - MRC CBU Imaging Wiki
CbuImaging: AnalyzingDiffusion

Principles of Diffusion MRI data

Here you can find a brief summary of the basic principles behind acquisition and analysis of diffusion-wieghted MRI images. attachment:Diffusion%5Fand%5FMRI.pdf

Sequences for Diffusion

On the 4th of December there will be a meeting held at the Unit to discuss the new CBU standard protocol for acquisition of diffusion weighted images. Here you can find some generic guidelines for chosing the voxel size/shape for you diffusion MRI experiment. attachment:Diffuson_voxel_size.doc

Analyzing diffusion data

For the moment we are using FSL

See SiemensDiffusionImages for an explanation of the images that the Siemens Trio writes out from a diffusion run.

Here are some notes on getting going with the fdt package for diffusion analysis in FSL: DiffusionFdtNotes

We had in informal meeting to share experience between the WBIC, FSL, and CSL: DiffusionMeeting10May2007

There was a meeting of the [:MriPhysicsAndAnalysisForCognitiveNeuroscientists:MR physics & analysis for cognitive neuroscientists] group in November 2009 on DTI.

CbuImaging: AnalyzingDiffusion (last edited 2009-12-02 11:56:06 by RhodriCusack)