Diff for "AnalyzingDiffusion" - MRC CBU Imaging Wiki
location: Diff for "AnalyzingDiffusion"
Differences between revisions 7 and 9 (spanning 2 versions)
Revision 7 as of 2009-11-09 13:42:16
Size: 566
Editor: RhodriCusack
Comment:
Revision 9 as of 2009-12-02 11:41:54
Size: 891
Editor: RhodriCusack
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
= Sequences for Diffusion =
On the 4th of December there will be a meeting held at the Unit to discuss the new standard protocol for acquisition of diffusion weighted images. Here you can find some generic guidelines for chosing the voxel size/shape for you diffusion MRI experiment.
attachment:Diffusion%5Fvoxel%5Fsize.doc
Line 2: Line 5:

Sequences for Diffusion

On the 4th of December there will be a meeting held at the Unit to discuss the new standard protocol for acquisition of diffusion weighted images. Here you can find some generic guidelines for chosing the voxel size/shape for you diffusion MRI experiment. attachment:Diffusion%5Fvoxel%5Fsize.doc

Analyzing diffusion data

For the moment we are using FSL

See SiemensDiffusionImages for an explanation of the images that the Siemens Trio writes out from a diffusion run.

Here are some notes on getting going with the fdt package for diffusion analysis in FSL: DiffusionFdtNotes

We had in informal meeting to share experience between the WBIC, FSL, and CSL: DiffusionMeeting10May2007

There was a meeting of the [:MriPhysicsAndAnalysisForCognitiveNeuroscientists:MR physics & analysis for cognitive neuroscientists] group in November 2009 on DTI.

CbuImaging: AnalyzingDiffusion (last edited 2015-03-30 16:39:29 by OlafHauk)