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We are just getting going with diffusion analysis.
Analyzing diffusion data
For the moment we are using FSL
See SiemensDiffusionImages for an explanation of the images that the Siemens Trio writes out from a diffusion run.
Here are some notes on getting going with the fdt package for diffusion analysis in FSL: DiffusionFdtNotes
We had in informal meeting to share experience between the WBIC, FSL, and CSL: DiffusionMeeting10May2007
There was a meeting of the [:MriPhysicsAndAnalysisForCognitiveNeuroscientists:MR physics & analysis for cognitive neuroscientists] group in November 2009 on DTI.