<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>AfniInstallationNotes</title><revhistory><revision><revnumber>6</revnumber><date>2013-03-07 21:23:08</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>5</revnumber><date>2007-04-17 16:16:56</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>4</revnumber><date>2007-04-17 15:57:48</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>3</revnumber><date>2007-04-17 15:48:27</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>2</revnumber><date>2007-04-17 15:45:32</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>1</revnumber><date>2007-04-17 15:36:53</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision></revhistory></articleinfo><section><title>AFNI installation notes</title><itemizedlist><listitem><para><ulink url="http://afni.nimh.nih.gov/afni/doc/howto/0"/> </para></listitem><listitem><para><ulink url="http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/index.shtml"/> </para></listitem><listitem><para><ulink url="http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/linux_comp.shtml"/> </para></listitem><listitem><para><ulink url="http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI"/> </para></listitem></itemizedlist><para>For the imaging servers </para><screen><![CDATA[release=0841
cd /imaging/matthew/installs
wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_src.tgz
tar zxvf afni_src.tgz
release_dir=afni_src_$release
mv afni_src $release_dir
cd $release_dir
make -f Makefile.linux_gcc32 totality suma
cp linux_gcc32/* /imaging/local/linux/afni/bin]]></screen><section><title>Optional installs (docs, data)</title><para>This lifted from <ulink url="http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI"/> with thanks. </para><section><title>Install docs</title><screen><![CDATA[wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_doc.tgz
tar xfz afni_doc.tgz
mv afni_doc /imaging/local/linux/afni/doc]]></screen></section><section><title>Install sample data</title><screen><![CDATA[wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data1.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data2.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_demo.tgz
wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_StandardMeshes.tgz
wget http://afni.nimh.nih.gov/sscc/staff/ziad/SUMA/SUMA_demo-FS.tgz
]]><![CDATA[
mv AFNI_data?.tgz SUMA_*.tgz /imaging/local/linux/afni/data
cd /imaging/local/linux/afni/data
tar xfz AFNI_data1.tgz
tar xfz AFNI_data2.tgz
tar xfz SUMA_demo.tgz
tar xfz SUMA_StandardMeshes.tgz
]]><![CDATA[
mkdir suma_demo
cd suma_demo
tar xvfz ../SUMA_demo-FS.tgz
cd ..
]]><![CDATA[
rm -f AFNI_data?.tgz SUMA_*.tgz]]></screen></section><section><title>AFNI's Talairach dataset</title><screen><![CDATA[wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.HEAD
wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.BRIK.gz
mv TTatlas+tlrc.* /imaging/local/linux/afni/bin]]></screen></section></section></section></article>