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← Revision 9 as of 2013-03-08 10:02:29 ⇥
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing|Pre-processing MRI Data in Freesurfer]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Segment Head Surfaces]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Prepare MRI Data for MNE]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Prepare Source Space (Cortical Surface) for MNE]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Align MEG and MRI coordinate systems]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution|Set Up BEM Information for MNE]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution|Compute Forward Solution]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging|Average MEG Data]], [[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix|Compute Covariance Matrix]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Compute Average Cortical Surface]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator|Create Inverse Operator (from Forward Solution)]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Compute Source Estimates (Apply Inverse Operator to MEG data)]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Average Source Estimates]]:''' |
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:''' | '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels|Extract ROI data]]:''' |
Overview of MNE Processing Steps and Commands
Pre-processing MRI Data in Freesurfer:
- mri_convert
- recon-all
- mne_watershed_bem
- mne_setup_mri
Prepare Source Space (Cortical Surface) for MNE:
- mne_setup_source_space
Align MEG and MRI coordinate systems:
- mne_analyze
Set Up BEM Information for MNE:
- mne_setup_forward_model
- mne_do_forward_solution
Average MEG Data, Compute Covariance Matrix:
- mne_process_raw
Compute Average Cortical Surface:
- make_average_subject
Create Inverse Operator (from Forward Solution):
- mne_do_inverse_operator
Compute Source Estimates (Apply Inverse Operator to MEG data):
- mne_make_movie
- mne_average_estimates
- mne_make_movie